PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00143283001
Common NameGSBRNA2T00143283001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 311aa    MW: 34445.1 Da    PI: 6.8617
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00143283001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY61.91.1e-19216255139
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEE CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkve 39 
                          ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v 
  GSBRNA2T00143283001 216 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVH 255
                          58***************************99*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-19201255IPR003657WRKY domain
SuperFamilySSF1182902.09E-18209256IPR003657WRKY domain
PROSITE profilePS5081119.6211254IPR003657WRKY domain
SMARTSM007741.0E-15216279IPR003657WRKY domain
PfamPF031061.9E-17217255IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEVLLKLPTS DSLLTVKDHG SAKIHEAIKG DGDHQELESA KAEMSEVKQE NEKLKGMLER  60
IESDYKSLKL RLFDVIQHEP SNNPTHQSVV DLRTDLSSLD QEGELVSLSL GRRSSSPSDN  120
TSKKEEKADA ITKEVNSDEE LTKAGLTLGF NNGNDREPNK SLSIVDSLEE ASKVTGKRSS  180
PSPLASGGDA DGEAGQQNNV KRARVCVRAR CDTPTMNDGC QWRKYGQKIA KGNPCPRAYY  240
RCTVAPGCPV RKQVHIVYIL FCMVLILVSI YIFHIYDSIL NVNIPMAIVI YTRGWSALRA  300
DEFTLKLFYI *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.136165e-98seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00143283001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892320.0AC189232.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB013N08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013659605.10.0probable WRKY transcription factor 72
SwissprotQ9LXG81e-129WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A3P5ZZS30.0A0A3P5ZZS3_BRACM; Uncharacterized protein
STRINGBra023505.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-118WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]