PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00143240001 | ||||||||
Common Name | GSBRNA2T00143240001, LOC106390407 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CO-like | ||||||||
Protein Properties | Length: 318aa MW: 35451.8 Da PI: 7.2472 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.9 | 1.5e-06 | 10 | 52 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 ++C+++ + + +C+ ++ +lC +C + H H++v GSBRNA2T00143240001 10 QVCNTCRSAACTVYCRADSAYLCSTCDAQVHAAnllasrHERV 52 58******99*********************657788888776 PP | |||||||
2 | zf-B_box | 32.3 | 2.1e-10 | 52 | 97 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 r+C+ +e+ ++ +fC+ + lC C +++H H++vp+ GSBRNA2T00143240001 52 VRVCEACERAPAAFFCKADAASLCIACDSQIHLVnplarrHQRVPI 97 689*****************************33455556999986 PP | |||||||
3 | CCT | 67.8 | 2.9e-23 | 246 | 290 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea+++RY+eK+ktRkFeK++rY+sRKa+Ae+RpR+KGrFvk++e GSBRNA2T00143240001 246 REARVMRYREKKKTRKFEKRVRYASRKAYAETRPRIKGRFVKREE 290 9*****************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 6.3E-8 | 7 | 54 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.694 | 7 | 54 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.58E-7 | 11 | 54 | No hit | No description |
PROSITE profile | PS50119 | 12.187 | 50 | 97 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.3E-8 | 52 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.24E-10 | 53 | 97 | No hit | No description |
SMART | SM00336 | 2.9E-10 | 55 | 97 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.847 | 246 | 288 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.1E-17 | 246 | 288 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MLKQDRNWTQ VCNTCRSAAC TVYCRADSAY LCSTCDAQVH AANLLASRHE RVRVCEACER 60 APAAFFCKAD AASLCIACDS QIHLVNPLAR RHQRVPILPI SSMATNHSSE TTAMTGPENI 120 VVMGQEEEDE TEVASWLLPS SEKNSGNNNN SLDLVDYQQD YNVPRSRYAR DGVVPLQVEE 180 SKAHMHHEQH NFQFGFTNVS SGCHMVSLVP ESTTSDTTVV LHSPSPKAAT DQLPDPSTQI 240 LSPGEREARV MRYREKKKTR KFEKRVRYAS RKAYAETRPR IKGRFVKREE VDAEAEADQG 300 FSTMTMFNTG YGVVPSL* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout development. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves and at lower levels in stems, flowers and siliques. Not detected in roots. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00143240001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240087 | 0.0 | AC240087.1 Brassica oleracea clone BOT01-44D22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013686315.1 | 0.0 | zinc finger protein CONSTANS-LIKE 1 | ||||
Swissprot | O50055 | 1e-135 | COL1_ARATH; Zinc finger protein CONSTANS-LIKE 1 | ||||
TrEMBL | A0A3P6AML8 | 0.0 | A0A3P6AML8_BRACM; Uncharacterized protein | ||||
STRING | Bra023541.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2128 | 26 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15850.1 | 1e-112 | CONSTANS-like 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 106390407 |
Publications ? help Back to Top | |||
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