PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00143224001 | ||||||||
Common Name | GSBRNA2T00143224001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Nin-like | ||||||||
Protein Properties | Length: 255aa MW: 28658.5 Da PI: 10.3199 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 60.7 | 2.7e-19 | 162 | 212 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++++d+s+ +lpi++AA++L +c+T++K+iCR+ + RWP+Rk++sl GSBRNA2T00143224001 162 TRSLTVKDMSELWDLPIEEAARKLRICTTAVKKICRRGEVFRWPRRKLASL 212 6789********************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 15.153 | 152 | 233 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.9E-17 | 164 | 212 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MPVPVITPTP TISQGLFLCT YCNLLRQLVH ANGQEMMRLD LFGGIGYFCH AVIETRRFDG 60 SNELRYQMNL KMEDVKKFIE GYCAARAAEG FVIMQDTNAD FYQAMNACTT SSQLLMSTLP 120 PRVDIPMSLA VPNKSLNVAS VPPAAKGKPR RQTNLSAQRK RTRSLTVKDM SELWDLPIEE 180 AARKLRICTT AVKKICRRGE VFRWPRRKLA SLREKVAALK IVVSQSTDVG VRARAEVKIE 240 NFEKQIDAIY SKAR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 192 | 208 | KKICRRGEVFRWPRRKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.8036 | 0.0 | flower| microspore-derived embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00143224001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240087 | 1e-180 | AC240087.1 Brassica oleracea clone BOT01-44D22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013651295.1 | 0.0 | uncharacterized protein LOC106355989 | ||||
TrEMBL | A0A3P6AMJ6 | 0.0 | A0A3P6AMJ6_BRACM; Uncharacterized protein | ||||
TrEMBL | M4E448 | 0.0 | M4E448_BRARP; Uncharacterized protein | ||||
STRING | Bra023551.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4076 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 6e-09 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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