PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00143224001
Common NameGSBRNA2T00143224001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 255aa    MW: 28658.5 Da    PI: 10.3199
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00143224001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK60.72.7e-19162212252
               RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          + +++++d+s+  +lpi++AA++L +c+T++K+iCR+  + RWP+Rk++sl
  GSBRNA2T00143224001 162 TRSLTVKDMSELWDLPIEEAARKLRICTTAVKKICRRGEVFRWPRRKLASL 212
                          6789********************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.153152233IPR003035RWP-RK domain
PfamPF020423.9E-17164212IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MPVPVITPTP TISQGLFLCT YCNLLRQLVH ANGQEMMRLD LFGGIGYFCH AVIETRRFDG  60
SNELRYQMNL KMEDVKKFIE GYCAARAAEG FVIMQDTNAD FYQAMNACTT SSQLLMSTLP  120
PRVDIPMSLA VPNKSLNVAS VPPAAKGKPR RQTNLSAQRK RTRSLTVKDM SELWDLPIEE  180
AARKLRICTT AVKKICRRGE VFRWPRRKLA SLREKVAALK IVVSQSTDVG VRARAEVKIE  240
NFEKQIDAIY SKAR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192208KKICRRGEVFRWPRRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.80360.0flower| microspore-derived embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00143224001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2400871e-180AC240087.1 Brassica oleracea clone BOT01-44D22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651295.10.0uncharacterized protein LOC106355989
TrEMBLA0A3P6AMJ60.0A0A3P6AMJ6_BRACM; Uncharacterized protein
TrEMBLM4E4480.0M4E448_BRARP; Uncharacterized protein
STRINGBra023551.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40762342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.16e-09RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]