PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00143201001 | ||||||||
Common Name | GSBRNA2T00143201001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 307aa MW: 34780.6 Da PI: 4.9166 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.4 | 3.8e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l++ + G +W++ ++ g+ R++k+c++rw +yl GSBRNA2T00143201001 14 KGPWTVEEDKKLINFILTNGQCCWRALPKLSGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 9.8e-17 | 71 | 111 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E++ +d+++qlG++ W++Ia++++ gRt++++k++w+++ GSBRNA2T00143201001 71 SENEEQMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111 789***************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-19 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.65 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.31E-26 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-12 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.24E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.778 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-25 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.9E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 70 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.68E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 307 aa Download sequence Send to blast |
MGRQPCCDKV GLKKGPWTVE EDKKLINFIL TNGQCCWRAL PKLSGLLRCG KSCRLRWINY 60 LRPDLKRGLL SENEEQMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLRKMG 120 IDPMTHKPLS EQDVSRDEKN TNQGQEDQQQ TRKEEDQQHQ LGKDLEKNNT PISTDDGFCI 180 DDIPLLSPHE IFVDIPSAHH HTSDDNANIN ISNSTSPSSS SSSTSSCISS LPGDEFSKFL 240 DEMEIVDLKW LSSDDSSGGN INYNDGKFNN NVDTMSLWDI NDLSSLELFM NDHDDSVVEA 300 DVQEWF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in chalaza of mature seeds, cotyledons, rosette leaves, cauline leaves, veins of stems, mature siliques, sepals and styles. Expressed at low levels in roots. {ECO:0000269|PubMed:23660402}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00143201001 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF175990 | 1e-180 | AF175990.1 Arabidopsis thaliana putative transcription factor (MYB43) mRNA, complete cds. | |||
GenBank | AY519625 | 1e-180 | AY519625.1 Arabidopsis thaliana MYB transcription factor (At5g16600) mRNA, complete cds. | |||
GenBank | BT002762 | 1e-180 | BT002762.1 Arabidopsis thaliana clone C105246 unknown protein (At5g16600) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013649833.1 | 0.0 | myb-related protein 308-like | ||||
Swissprot | Q9C7U7 | 4e-91 | MYB20_ARATH; Transcription factor MYB20 | ||||
TrEMBL | A0A3P6ADG1 | 0.0 | A0A3P6ADG1_BRACM; Uncharacterized protein | ||||
STRING | Bo2g013190.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16600.1 | 1e-142 | myb domain protein 43 |
Publications ? help Back to Top | |||
---|---|---|---|
|