PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00143151001
Common NameGSBRNA2T00143151001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 570aa    MW: 62416 Da    PI: 6.4278
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00143151001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.7e-15209268155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  GSBRNA2T00143151001 209 SIYRGVTRHRWTGRYEAHLWDnSCKrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 268
                          57*******************999975578446*************************98 PP
2AP251.23.2e-16311362155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  GSBRNA2T00143151001 311 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 362
                          57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-11209268IPR001471AP2/ERF domain
CDDcd000181.41E-19209278No hitNo description
SuperFamilySSF541714.38E-17209277IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-15210276IPR001471AP2/ERF domain
PROSITE profilePS5103219.164210276IPR001471AP2/ERF domain
SMARTSM003804.9E-29210282IPR001471AP2/ERF domain
PRINTSPR003674.6E-6211222IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-17311372IPR016177DNA-binding domain
PfamPF008474.0E-11311362IPR001471AP2/ERF domain
CDDcd000187.90E-24311372No hitNo description
Gene3DG3DSA:3.30.730.101.9E-17312371IPR001471AP2/ERF domain
PROSITE profilePS5103218.782312370IPR001471AP2/ERF domain
SMARTSM003801.8E-32312376IPR001471AP2/ERF domain
PRINTSPR003674.6E-6352372IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MNNNWLGFSL SPSDQNIHRT GVVDSSTATT AVDVTGEYCY DMTAASDESS AVRTSFPSPF  60
GVVLDAFTRD NNSHSRDWDI NGGACNNIHS NDQNEPKLEN FFGRTTTIYN NSENGGDGNG  120
GCGGGDGAGG SLGLSMIKTW LTNQPVSNVD HQENNGNAAR GLSLSMNSST TCDSNKYNNR  180
NNVVQEKTNV DSVDATPKKT IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQARK  240
GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPITEY EKEVEDMNHM TRQEYVASLR  300
RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF  360
RGLTAVTNFE MSRYNVKAIL DSPSLPIGSS AKRLKEVNHP VPSMMINNNV SESENDASGW  420
QNAAVQHHHG IDLSLLQQHQ ERYNNYYNGG SARAYFKEEE DQHHFLSNSP SLMANIDQHS  480
SASGDMVTVY GNVGGYGGHQ GLAIPVGTSL NCDTLAAAEI AYDARNHYYF AQQQQGGGFP  540
VGISNNVGSN MYFNGEGGGE GAFTVWNNT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.108584e-60microspore-derived embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00143151001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3179040.0AF317904.1 Brassica napus AP2/EREBP transcription factor BABY BOOM1 (BBM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013652417.10.0AP2-like ethylene-responsive transcription factor BBM2 isoform X1
SwissprotQ8LSN20.0BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A398AAA50.0A0A398AAA5_BRACM; Uncharacterized protein
STRINGBo2g013700.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.10.0AP2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]