PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00143116001
Common NameGSBRNA2T00143116001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 341aa    MW: 38923.3 Da    PI: 4.6268
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00143116001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.9e-1819110196
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffk+l ++d +++ + ++p + +++++ +  +s++++l+ ++g sW+vk+  +k+++  y+  +GW++Fv+ n L e++ ++F+++g+++
  GSBRNA2T00143116001  19 FFKILRREDLSSQLIRMIPHDIIRSISDD-SSSFKMVLKVPWGSSWTVKI--SKNPSFhYMEDDGWNQFVNNNALGENEYLTFTHEGNMR 105
                          99***********999**********766.5899****************..99999957777***********************9999 PP

                          E..EEEE CS
                   B3  90 felvvkv 96 
                          f  +v +
  GSBRNA2T00143116001 106 F--NVNI 110
                          9..5555 PP
2B336.86.8e-122212981699
                          EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          l +pk f+e h+ kk++    +++ e   sW+v +    ++ +  +++GW++  ++ gL +gD+++Fkl++   +e++vkv r+
  GSBRNA2T00143116001 221 LGVPKVFVEMHMAKKTK--WFKIRPEGKDSWDVLF--LVTDAQSRFSAGWSRLSRELGLVVGDVCTFKLIK--PTEMLVKVSRH 298
                          679********988666..677779999*******..555555569**********************987..77789999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-1814115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-1915118IPR015300DNA-binding pseudobarrel domain
CDDcd100172.70E-1317111No hitNo description
PROSITE profilePS5086312.94319114IPR003340B3 DNA binding domain
SMARTSM010192.5E-2119114IPR003340B3 DNA binding domain
PfamPF023629.2E-1619110IPR003340B3 DNA binding domain
PROSITE profilePS5086310.785206299IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-14206298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-17206298IPR015300DNA-binding pseudobarrel domain
CDDcd100172.01E-11207293No hitNo description
SMARTSM010197.1E-13209299IPR003340B3 DNA binding domain
PfamPF023624.0E-8220298IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MVRNGGFGQI MEEGDSPGFF KILRREDLSS QLIRMIPHDI IRSISDDSSS FKMVLKVPWG  60
SSWTVKISKN PSFHYMEDDG WNQFVNNNAL GENEYLTFTH EGNMRFNVNI YGPDGTEMLE  120
PRESATIASS SGMNKREQRE RVYKHVKEEI VSSSESSYYS IKRAQGKKQE PNLGKKKAEE  180
SKKNKKSMKK KKKVDNDLEE GTSSLVPEFS ITIRKSHLVF LGVPKVFVEM HMAKKTKWFK  240
IRPEGKDSWD VLFLVTDAQS RFSAGWSRLS RELGLVVGDV CTFKLIKPTE MLVKVSRHDD  300
EDDDIEEDDD SDEEEAEDAD EDDSDDEDAE DEDDADKSED *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174192KKKAEESKKNKKSMKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.98010.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00143116001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013728820.10.0B3 domain-containing protein At5g18000-like
SwissprotQ9FJG21e-131Y5800_ARATH; B3 domain-containing protein At5g18000
TrEMBLA0A398AAE30.0A0A398AAE3_BRACM; Uncharacterized protein
STRINGXP_006400343.11e-144(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-118VERDANDI
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]