PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00143109001 | ||||||||
Common Name | GSBRNA2T00143109001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 184aa MW: 21836.7 Da PI: 10.3612 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.3 | 1.5e-17 | 28 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l +++ lG g+W++ ar+ g++Rt+k+c++rw++yl GSBRNA2T00143109001 28 RGPWTVEEDFKLSNYISTLGEGRWNSLARCAGLKRTGKSCRLRWLNYL 75 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2e-16 | 81 | 124 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ GSBRNA2T00143109001 81 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 124 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.673 | 23 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.76E-31 | 25 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-14 | 27 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 28 | 75 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-22 | 29 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.97E-10 | 30 | 75 | No hit | No description |
PROSITE profile | PS51294 | 22.917 | 76 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-14 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-15 | 81 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-23 | 83 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.56E-6 | 101 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MDGKRSFEIN KNMGDFENNV DDEMDLRRGP WTVEEDFKLS NYISTLGEGR WNSLARCAGL 60 KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHSRWG NRWSKIAQYL PGRTDNEIKN 120 YWRTRVQKHA KQLRCDVNSQ QFKDTMRYLW MPRLVERIQA ASASSTTVRD HQQQQQLLNN 180 RSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-26 | 25 | 122 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00143109001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM975657 | 0.0 | KM975657.1 Brassica napus MYB transcription factor 78-2.1 (MYB78-2.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596410.1 | 1e-121 | PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB108 | ||||
Refseq | XP_013646027.1 | 1e-122 | transcription factor MYB78-like | ||||
Refseq | XP_013647364.1 | 1e-121 | transcription factor MYB78-like | ||||
Swissprot | Q9FGY3 | 7e-92 | MYB78_ARATH; Transcription factor MYB78 | ||||
TrEMBL | A0A3P6F016 | 1e-120 | A0A3P6F016_BRAOL; Uncharacterized protein | ||||
STRING | Bra010021.1-P | 1e-120 | (Brassica rapa) | ||||
STRING | Bra010022.1-P | 1e-120 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 3e-94 | myb domain protein 78 |
Publications ? help Back to Top | |||
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