PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00142929001 | ||||||||
Common Name | GSBRNA2T00142929001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 243aa MW: 26750 Da PI: 6.3148 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 64.3 | 2.7e-20 | 6 | 66 | 25 | 85 |
trihelix 25 klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +++p+W++vs+++r +g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++ +++ GSBRNA2T00142929001 6 GQMEPKWASVSSYCRLHGVNRGPVQCRKRWSNLAGDYKKIKEWESQVKEEAESYWVMRNDV 66 4899***************************************************999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 8.3E-10 | 9 | 63 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MALGSGQMEP KWASVSSYCR LHGVNRGPVQ CRKRWSNLAG DYKKIKEWES QVKEEAESYW 60 VMRNDVRRER KLPGFFDKEV YDIVDGGVVP PANPVLALGL APASTSAEEP ARSVEKLSSA 120 SAPKSLIDVI DKEKQAACEA ADQGGMKERH PEAANPEAAS TSQEERKRKR TSSGDEEGEA 180 TKSRQDQLIE ILERNGQLLA AQLEVQNTNL KLDREQRKDH GDNLVAVLNK LADAVAKIAD 240 KL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.6150 | 9e-87 | seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00142929001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189292 | 2e-99 | AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013752299.1 | 1e-176 | trihelix transcription factor ASR3 | ||||
Swissprot | Q8VZ20 | 1e-131 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | A0A078GS12 | 1e-174 | A0A078GS12_BRANA; BnaCnng05440D protein | ||||
STRING | Bra005486.1-P | 1e-173 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6557 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-133 | Trihelix family protein |
Publications ? help Back to Top | |||
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