PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00142647001
Common NameGSBRNA2T00142647001, LOC106381806
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 332aa    MW: 36265.4 Da    PI: 5.9454
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00142647001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.2e-10165212455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  GSBRNA2T00142647001 165 SHSLAERARREKISERMTLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 212
                          8**************************....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.64E-11159216No hitNo description
SuperFamilySSF474597.33E-17159231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-17161230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-7165212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-10167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MENQSIKYVA LGQSDPFGNN VNEGTIGDLL VGRFCNPQET ISPYPAGNLR FPPYPGQFGS  60
QDSNKSSLLD PDLDRVQTAK PNSRKRKLIP SASASGGNGK ESPASSSLTA SNSKVSGEIV  120
GSKRSKQDEA GSSKKDDGNK DDAKPPEPPK DYIHVRARRG QATDSHSLAE RARREKISER  180
MTLLQDLVPG CNRITGKAVM LDEIINYVQS LQRQVEFLSM KLATINPRME FNPSAALSTE  240
MVQPGEALTQ SLYSMACSEQ RLPSAYYSLA KNMPRFSDTQ FPSSDAFVQA ETQGFWDNDL  300
QSIVQMGFGD VQQQSNNNSC SEPTLQMKLE P*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.288540.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00376DAPTransfer from AT3G23690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00142647001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0654411e-164AY065441.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
GenBankAY0965361e-164AY096536.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013677192.10.0transcription factor bHLH77
SwissprotQ9LK481e-177BH077_ARATH; Transcription factor bHLH77
TrEMBLA0A0D3D5D30.0A0A0D3D5D3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E9G20.0A0A3P6E9G2_BRAOL; Uncharacterized protein
STRINGBo7g039150.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74062039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.11e-152bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]