PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00142535001
Common NameGSBRNA2T00142535001, LOC106421474
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 139aa    MW: 15486.9 Da    PI: 4.8399
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00142535001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-191263256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         +y+GVr ++ +g+++AeIrd  +    +r++lg+f tae+Aa+a+++ + +++g+
  GSBRNA2T00142535001 12 KYRGVRKRP-WGKYAAEIRDSANH--GARVWLGTFNTAEDAARAYDRSAFSMRGH 63
                         8********.**********5333..3**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-221272IPR016177DNA-binding domain
CDDcd000185.80E-271271No hitNo description
PROSITE profilePS5103223.1031270IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-311272IPR001471AP2/ERF domain
PfamPF008475.1E-131263IPR001471AP2/ERF domain
SMARTSM003803.6E-341276IPR001471AP2/ERF domain
PRINTSPR003671.5E-111324IPR001471AP2/ERF domain
PRINTSPR003671.5E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MEHRASNTNQ VKYRGVRKRP WGKYAAEIRD SANHGARVWL GTFNTAEDAA RAYDRSAFSM  60
RGHKAILNFP HEYPMMRDGP SGDGENAGAS LSSEFSERDG GGGKEVIEFE YLDDSLLDEL  120
LECGESYNQD VWYNATVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-3641166114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00373DAPTransfer from AT3G23220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00142535001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013717769.11e-100ethylene-responsive transcription factor ERF095
SwissprotQ9LTC65e-42ERF95_ARATH; Ethylene-responsive transcription factor ERF095
TrEMBLA0A0D3D5K13e-93A0A0D3D5K1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ELV93e-93A0A3P6ELV9_BRAOL; Uncharacterized protein
STRINGBo7g040820.15e-94(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.16e-41ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Quan R, et al.
    EIN3 and SOS2 synergistically modulate plant salt tolerance.
    Sci Rep, 2017. 7: p. 44637
    [PMID:28300216]