PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00142534001

Common Name

GSBRNA2T00142534001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 307aa MW: 34024.7 Da PI: 4.7515

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00142534001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.8	9.5e-09	152	199	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE++RR+ +N++f L + l + + +K +K +i A++ +++L GSBRNA2T00142534001 152 TKASREKKRREMLNDKFMDLSSFLEPT---RTPKTDKPAIIDDAIRVVNQL 199 5678********************9...9**************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.553	148	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.16E-7	152	200	No hit	No description
Pfam	PF00010	3.4E-6	153	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.54E-11	154	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-6	154	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.8E-10	155	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MYQSNEDDDD FFAALCFDQS NGGEDPYAFI QTEQGNLFQD FGSSSGVNLQ PEQEQFGSFS 60 GNLPQVCSFT GENNGLAAFG GHSIGFGSSQ LDLGTSSYSG LLQQEPHQVC SFRGRNNDSV 120 PLEINSSSSV GGVKEELEEE CSRKRGRTGP GTKASREKKR REMLNDKFMD LSSFLEPTRT 180 PKTDKPAIID DAIRVVNQLR GEAHELKETN QKLLEEIKSL KAEKNELREE KLVLKADKEK 240 MEQQLKSMTT VPSPGFLPSH PAAFHQNKMA VYASYGYYPN MPMMPYLLPP SQRDTSQDQQ 300 NCSFAA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	160	RKRGRTGPGTKASREKKRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.13271	0.0	microspore

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00372	DAP	Transfer from AT3G23210	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00142534001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013717782.1	0.0	transcription factor bHLH34-like
Swissprot	Q9LTC7	1e-143	BH034_ARATH; Transcription factor bHLH34
TrEMBL	A0A0D3D5K2	0.0	A0A0D3D5K2_BRAOL; Uncharacterized protein
STRING	Bo7g040830.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4026	26	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23210.1	1e-132	bHLH family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]