PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00142504001 | ||||||||
Common Name | GSBRNA2T00142504001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ZF-HD | ||||||||
Protein Properties | Length: 239aa MW: 25894.9 Da PI: 8.3804 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 42.8 | 1.2e-13 | 53 | 84 | 28 | 58 |
ZF-HD_dimer 28 fmpsegee.gtaaalkCaACgCHRnFHRreve 58 f+ps++ + +++++l+C ACgCHRnFHRre + GSBRNA2T00142504001 53 FIPSPTFNtSDPTSLTCDACGCHRNFHRREDD 84 88999988899******************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.6E-9 | 53 | 83 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 8.0E-10 | 53 | 82 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 9.41E-17 | 141 | 206 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-26 | 144 | 205 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 8.9E-25 | 149 | 205 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MDVIATSATI VSHLDSQQPV TQAPTRIQPA KPISFSNGKH HHDHQHHASQ VVFIPSPTFN 60 TSDPTSLTCD ACGCHRNFHR REDDLSAVSA AVPRIEFRPH NRHQLPPPPL PPVGVGSQDD 120 DDPASPPPIS SSYMLLALSG GATAAPVSRK RFRTKFSEFQ KGKMFEFAER VGWRMPKADD 180 VDVVEFCREI GVERSVFKVW MHNNKIPGRG GGARRANGDG GGGDGRESVP TNGSFTST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-20 | 150 | 208 | 18 | 76 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.14599 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00142504001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009121598.1 | 1e-132 | PREDICTED: zinc-finger homeodomain protein 8 | ||||
Refseq | XP_013667736.1 | 1e-132 | zinc-finger homeodomain protein 8-like | ||||
Swissprot | Q9LXG0 | 1e-102 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A397XR59 | 1e-143 | A0A397XR59_BRACM; Uncharacterized protein | ||||
STRING | Bra008712.1-P | 1e-132 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2220 | 25 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 1e-88 | homeobox protein 30 |
Publications ? help Back to Top | |||
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