PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00142496001

Common Name

GSBRNA2T00142496001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 308aa MW: 35665.6 Da PI: 6.6803

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00142496001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.2e-18	112	164	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+ +Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k GSBRNA2T00142496001 112 KKRLSLEQVMALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 164 556899**********************************************9 PP
2	HD-ZIP_I/II	128.4	3.1e-41	110	201	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekk+rls eqv +LE+sFe +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlE+dy++Lk+++d lk++n++L +++++L++e GSBRNA2T00142496001 110 EKKKRLSLEQVMALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLANNKKLHAE 199 69**************************************************************************************99 PP HD-ZIP_I/II 91 lk 92 l GSBRNA2T00142496001 200 LV 201 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.4E-19	98	168	IPR009057	Homeodomain-like
SMART	SM00389	7.1E-18	109	170	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.584	110	166	IPR001356	Homeobox domain
CDD	cd00086	5.91E-16	111	167	No hit	No description
Pfam	PF00046	2.1E-15	112	164	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.7E-19	113	174	IPR009057	Homeodomain-like
PRINTS	PR00031	1.1E-5	137	146	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	141	164	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	146	162	IPR000047	Helix-turn-helix motif
Pfam	PF02183	4.4E-14	166	205	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MYEEERNNIA NNQERLRLEM AFPQHGFMFQ QLHEDNTHHL PSPTSLPSCP PHLFYGGGNY 60 MMNRSMSFTG VSDHHHLTQK SPTTTNMHDQ DQVGEEDNLS DDGSHMMLGE KKKRLSLEQV 120 MALEKSFELG NKLEPERKMQ LAKALGLQPR QIAIWFQNRR ARWKTKQLER DYDSLKKQFD 180 VLKSDNDSLL ANNKKLHAEL VALKKQDRQE SAKIKREIAE ASWSNNESTE NDNNNSDINH 240 VNMIKDLFPS SIRSATTTTT SAHIDHQMVQ DQGFCNMFSS IDETTSGSYW TWPDQQQQHH 300 NHHHHFN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	166	RRARWKTKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in flowers, and in the cortex of the root and the stem. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00142496001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK229364	0.0	AK229364.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-61-C06.
GenBank	BT044059	0.0	BT044059.1 Arabidopsis thaliana unknown protein (At5g15150) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013680513.1	0.0	homeobox-leucine zipper protein HAT7-like
Swissprot	Q00466	0.0	HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBL	A0A397XU22	0.0	A0A397XU22_BRACM; Uncharacterized protein
STRING	Bo9g165360.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3095	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15150.1	1e-152	homeobox 3

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]