PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00142494001

Common Name

GSBRNA2T00142494001, LOC106387304

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 551aa MW: 59515.6 Da PI: 6.4438

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00142494001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.7	6.3e-30	231	290	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+H h+ GSBRNA2T00142494001 231 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCAEDMSILITTYEGTHSHP 290 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-31	216	292	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-27	224	292	IPR003657	WRKY domain
PROSITE profile	PS50811	28.69	226	292	IPR003657	WRKY domain
SMART	SM00774	1.5E-36	231	291	IPR003657	WRKY domain
Pfam	PF03106	6.7E-27	232	290	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence Send to blast
MEVILKLPTS DSLLKDKVLG SAQIHEATKV EEDHQELESA KAEMREVKED NEKLKGMLER 60 IESDYKTLKL RFFDIIHQEE PSNNQTQDQN MIDLPKATTD LSSLDQEREL VSLSLGRRSS 120 SPSDNSSKKE EKTDATSNKV NDDEELTKAG LTLGFNSGNG PDPSVANPAN SSLENNLEDA 180 PGETWPPSKV SGKRSSAAPA SGGHVDGEGG QQNPVKRARV CVRARCDTPT MNDGCQWRKY 240 GQKIAKGNPC PRAYYRCTVA PGCPVRKQVQ RCAEDMSILI TTYEGTHSHP LPLSATTMAS 300 TTSAAASMLL SGSSSSSTAE MIGNNLYDNS RFINNNNKSF YSPTLHSPLH PTVTLDLTAP 360 QHSSSSLPSL NFNKFPNSFQ RFPSTSLNFS SNSSSSNSSL LNLPATWGNG YSSYTPYPYN 420 NVQFGTSNQV KTVQNNQSLT ETLTKALTSD PSFHSVIAAA ISSMVGSNGE QQMVGPRHPT 480 SDSVQRTAAT ENNKGRGGYF SSLLMSNIIA NNQTGASLDQ PSSQLTSLSM FNNSSSSSST 540 TSFVNKEEKS *

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence Send to blast

MEVILKLPTS DSLLKDKVLG SAQIHEATKV EEDHQELESA KAEMREVKED NEKLKGMLER  60
IESDYKTLKL RFFDIIHQEE PSNNQTQDQN MIDLPKATTD LSSLDQEREL VSLSLGRRSS  120
SPSDNSSKKE EKTDATSNKV NDDEELTKAG LTLGFNSGNG PDPSVANPAN SSLENNLEDA  180
PGETWPPSKV SGKRSSAAPA SGGHVDGEGG QQNPVKRARV CVRARCDTPT MNDGCQWRKY  240
GQKIAKGNPC PRAYYRCTVA PGCPVRKQVQ RCAEDMSILI TTYEGTHSHP LPLSATTMAS  300
TTSAAASMLL SGSSSSSTAE MIGNNLYDNS RFINNNNKSF YSPTLHSPLH PTVTLDLTAP  360
QHSSSSLPSL NFNKFPNSFQ RFPSTSLNFS SNSSSSNSSL LNLPATWGNG YSSYTPYPYN  420
NVQFGTSNQV KTVQNNQSLT ETLTKALTSD PSFHSVIAAA ISSMVGSNGE QQMVGPRHPT  480
SDSVQRTAAT ENNKGRGGYF SSLLMSNIIA NNQTGASLDQ PSSQLTSLSM FNNSSSSSST  540
TSFVNKEEKS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-21	218	292	1	74	WRKY transcription factor 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.24741	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00142494001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430078	0.0	KF430078.1 Brassica rapa WRKY transcription factor 72 (WRKY72) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013682588.1	0.0	probable WRKY transcription factor 72
Swissprot	Q9LXG8	0.0	WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBL	A0A0D3EFD9	0.0	A0A0D3EFD9_BRAOL; Uncharacterized protein
STRING	Bo9g165380.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2959	28	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	0.0	WRKY DNA-binding protein 72

Link Out ? help Back to Top
Entrez Gene	106387304

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]