PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00142419001 | ||||||||
Common Name | GSBRNA2T00142419001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | RAV | ||||||||
Protein Properties | Length: 355aa MW: 39257.5 Da PI: 9.9772 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.9 | 1e-12 | 68 | 116 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f +eeAa+ ++ a+++++g GSBRNA2T00142419001 68 SKFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAAASYDIAARRFRG 116 79****9888.8*********3.....5*************************98 PP | |||||||
2 | B3 | 100.2 | 1.3e-31 | 179 | 288 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f+k+ tpsdv+k++rlv+pk++ae+h ++++++ + led+ g++W+++++y+++s++yvltkGW++Fvk+++L+ GSBRNA2T00142419001 179 FEKAVTPSDVGKLNRLVIPKQHAEKHfplpamttatvvaamTPSPTKGVLINLEDRMGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLR 268 89****************************999999999985567799****************************************** PP TT-EEEEEE-SSSEE..EEE CS B3 76 egDfvvFkldgrsefelvvk 95 +gD+v F+++ +++l++ GSBRNA2T00142419001 269 AGDVVCFERSTGPDRQLYID 288 ********876677767665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.08E-25 | 68 | 123 | No hit | No description |
Pfam | PF00847 | 7.8E-7 | 68 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-16 | 68 | 124 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.454 | 69 | 124 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-27 | 69 | 130 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-19 | 69 | 124 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 9.0E-40 | 174 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.84E-31 | 177 | 282 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.06E-29 | 178 | 278 | No hit | No description |
SMART | SM01019 | 1.5E-24 | 179 | 293 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.704 | 179 | 293 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-28 | 179 | 288 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MDNSCIDDST SNTSGSLSTS TPSAKKKLSP PPPPPATMRL YRMGSGGSSV VLDSENGVET 60 ESRKLPSSKF KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE EEAAASYDIA ARRFRGRDAV 120 TNFKSPAIDG TDAESAFLEA HSKAEIVDML RKHTYADELQ QSKRKFLDGN GKRAREVLFE 180 KAVTPSDVGK LNRLVIPKQH AEKHFPLPAM TTATVVAAMT PSPTKGVLIN LEDRMGKVWR 240 FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVCFERSTG PDRQLYIDWK VQSGTEEITP 300 VQSVVRLFGV NIFNATTNAK PNDVAVECGG KKRSREVDLF ALGCSKKQTM INAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-57 | 176 | 296 | 11 | 121 | DNA-binding protein RAV1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.5206 | 1e-136 | flower| leaf| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00024 | PBM | Transfer from AT1G25560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00142419001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013637910.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like | ||||
Swissprot | Q9C6M5 | 0.0 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A3N6PZN5 | 0.0 | A0A3N6PZN5_BRACR; Uncharacterized protein | ||||
STRING | Bo5g043120.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 0.0 | RAV family protein |