PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00142288001
Common NameGSBRNA2T00142288001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 252aa    MW: 29007.9 Da    PI: 7.5659
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00142288001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.72.1e-30959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gk ye++s
  GSBRNA2T00142288001  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKQYEFCS 59
                         79***********************************************96 PP
2K-box92.76.2e-31931751698
                K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                           +qqe+ kLk++++ Lqr+qR+llGedL++Ls keL++Le+qL++slk+iR+ +++++l+q+++lq ke++l e+nk+Lr +l
  GSBRNA2T00142288001  93 DSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKHIRALRTQFMLDQLNDLQSKERMLAETNKTLRLRL 175
                          579****************************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.828161IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-33276IPR002100Transcription factor, MADS-box
CDDcd002651.63E-44276No hitNo description
PRINTSPR004046.3E-32323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-323859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.32691181IPR002487Transcription factor, K-box
PfamPF014869.9E-2694175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGKQYEFCSS  60
SSMLRTLDRY QKCNYGAPEP NVPSREALAV ELDSQQEYLK LKERYDALQR TQRNLLGEDL  120
GPLSTKELES LERQLDSSLK HIRALRTQFM LDQLNDLQSK ERMLAETNKT LRLRLADGYQ  180
MPLQLNPNPE DHDYGRHQQH EHSHHQAFFQ PLECEPILQM GCQGQQDHGM GAGPSVNNYM  240
LGWLPYDTNS I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-64751781104Developmental protein SEPALLATA 3
4ox0_B1e-64751781104Developmental protein SEPALLATA 3
4ox0_C1e-64751781104Developmental protein SEPALLATA 3
4ox0_D1e-64751781104Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.93720.0seed
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor active in inflorescence development and floral organogenesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00142288001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9679600.0KC967960.1 Brassica oleracea var. viridis SEP3 (SEP3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022570474.10.0developmental protein SEPALLATA 3-like isoform X1
SwissprotO040671e-167AGL9_SINAL; Agamous-like MADS-box protein AGL9 homolog
TrEMBLA0A0D3CDZ60.0A0A0D3CDZ6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F8230.0A0A3P6F823_BRAOL; Uncharacterized protein
STRINGBo5g051910.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62202644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.21e-167MIKC_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Bonhomme F,Sommer H,Bernier G,Jacqmard A
    Characterization of SaMADS D from Sinapis alba suggests a dual function of the gene: in inflorescence development and floral organogenesis.
    Plant Mol. Biol., 1997. 34(4): p. 573-82
    [PMID:9247539]