PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00142136001

Common Name

GSBRNA2T00142136001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 339aa MW: 38010.9 Da PI: 10.2824

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00142136001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.7	7.8e-31	272	330	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp ++++tYe eHnh+k GSBRNA2T00142136001 272 DDYSWRKYGQKPIKGSPYPRGYYKCSSIrGCPARKHVERCLEDPAMLIVTYEAEHNHPK 330 99*********************9988**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.3E-17	221	268	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	3.1E-33	258	330	IPR003657	WRKY domain
PROSITE profile	PS50811	30.481	265	331	IPR003657	WRKY domain
SuperFamily	SSF118290	1.12E-26	268	330	IPR003657	WRKY domain
SMART	SM00774	1.6E-36	270	330	IPR003657	WRKY domain
Pfam	PF03106	3.8E-26	272	329	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MEEIEGTNRA AVESCHRVLN LLSSRPHQQD HLYDMSLLSE TREAVFRFKR VANLLSSSSV 60 GHARFRRAKR PQTHLSQTIF LDSCLQRTEL TSSQKPPVVL RSDLSLGPTD SLTLGTRSFG 120 LNSNAKAPLL QLNQQQQQQL HERLQAHQQH QQRHQAEMML RKCNSGMSLS FDNSSCTTPT 180 MSSTRSFISS LSIDGSVNNS SSSFHLLGAP SSTDQSSQYS KRKCLMRGAD EHGSTKCGSS 240 SRCHCSKKRK HRVRRSIRVP AISNKVADIP PDDYSWRKYG QKPIKGSPYP RGYYKCSSIR 300 GCPARKHVER CLEDPAMLIV TYEAEHNHPK MPSQTVTT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-20	258	333	2	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00142136001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430039	0.0	KF430039.1 Brassica rapa WRKY transcription factor 21 (WRKY21) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018513624.1	0.0	PREDICTED: probable WRKY transcription factor 21
Swissprot	O04336	1e-167	WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBL	A0A397ZYF6	0.0	A0A397ZYF6_BRACM; Uncharacterized protein
STRING	Bra022808.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3567	28	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	1e-76	WRKY DNA-binding protein 21

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]