PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00142092001 | ||||||||
Common Name | GSBRNA2T00142092001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 247aa MW: 28503.7 Da PI: 5.0589 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.7 | 2.7e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l+++++++G +W++ +++ g+ R++k+c++rw +yl GSBRNA2T00142092001 14 RGPWTPEEDQILINYINLYGHSNWRALPKHAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+++++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l GSBRNA2T00142092001 67 RGNFTPQDEQTIINLHEVLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.265 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.19E-30 | 10 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.872 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.77E-9 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGRAPCCEKM GVKRGPWTPE EDQILINYIN LYGHSNWRAL PKHAGLLRCG KSCRLRWINY 60 LRPDIKRGNF TPQDEQTIIN LHEVLGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRLNEDH 120 NNGGVTNDLN GTNETAHEDK ESVIVDTTPT QQFTTLEISN NNKADDMMSY EDISALVDDS 180 FWSDVVSVDN KNSKEKMIED WEGMLNSNSK IYSYNNSKLY NDDMEFWFEV FNSSRRIEEL 240 SDIPEF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-28 | 14 | 117 | 7 | 109 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00142092001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189433 | 0.0 | AC189433.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068H20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009132770.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q9SJX8 | 1e-153 | MYB14_ARATH; Transcription factor MYB14 | ||||
TrEMBL | A0A3P5ZHS6 | 0.0 | A0A3P5ZHS6_BRACM; Uncharacterized protein | ||||
STRING | Bra022831.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 1e-133 | myb domain protein 14 |
Publications ? help Back to Top | |||
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