PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00141844001

Common Name

GSBRNA2T00141844001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TALE

Protein Properties

Length: 672aa MW: 73414.4 Da PI: 7.1107

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00141844001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.3	1.5e-09	392	429	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + GSBRNA2T00141844001 392 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 429 554459******************************88 PP
2	BELL	123.5	8.7e-40	251	322	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL s+l+eV++rY+qy++q+q+vissFe++ag+gsak+YtslAlk+iSr+FrcLk+aia+qi GSBRNA2T00141844001 251 ERQEIQMKKAKLSSMLHEVEQRYRQYHQQMQMVISSFEQAAGIGSAKSYTSLALKTISRQFRCLKEAIAGQI 322 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.9E-76	171	320	IPR006563	POX domain
Pfam	PF07526	3.0E-46	177	319	IPR006563	POX domain
PROSITE profile	PS50071	12.26	370	433	IPR001356	Homeobox domain
CDD	cd00086	1.12E-12	373	434	No hit	No description
SMART	SM00389	2.3E-9	373	437	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.99E-17	374	440	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.4E-29	376	439	IPR009057	Homeodomain-like
Pfam	PF05920	2.8E-18	390	429	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence Send to blast
MAAYFHGNPP EISAGTDGGL QTLILMNPTT YVPYTQQDDD SNNSNNNNNN TNNNNFVFLD 60 SRAPPQNANQ QFVGIPLSGH EAASITAADN ISVLHGYPPR VQYSLYGSHH VDPTHHQAAC 120 ETPRAQRGLS LTLSSQQQQQ QHRQTLHHVG FGSGPGEDIR VGSGSTASGV TNGVANLVSS 180 KYLKAAQELL DEVVKADSND INTKSQLFSS KKGTSVTDTK AVGESSTGAR EGSDGGGEAS 240 GKRTVELGTA ERQEIQMKKA KLSSMLHEVE QRYRQYHQQM QMVISSFEQA AGIGSAKSYT 300 SLALKTISRQ FRCLKEAIAG QIKAANKSLG EEDSVSGVGR FEGSRLKFVD HHLRQQRALQ 360 QLGMIQHPSN NAWRPQRGLP ERAVSVLRAW LFEHFLHPYP KDSDKHMLAK QTGLTRSQVS 420 NWFINARVRL WKPMVEEMYA EEMKEQGKNM GSMEKTPNLD ENIDDSASKS TSNQEKIPMG 480 GGGLDNYHLN PSHNGDVEGV TGMQESPKRL RTSDGTMMQP INEGFSLNEK MKILEERQGI 540 RSDGGYPFMV SFGQYQMDEM SRFNVAVSDQ ELLTQRFSGN NNGVSLTLGL PHCDSLSSTH 600 HQGFMQTHHG IQIGRSVKIG ETEEYGNSAI NGGSGSTATA HSSAAAAAAY NGMNIQNQKR 660 YVAQLLPDFV A*

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence Send to blast

MAAYFHGNPP EISAGTDGGL QTLILMNPTT YVPYTQQDDD SNNSNNNNNN TNNNNFVFLD  60
SRAPPQNANQ QFVGIPLSGH EAASITAADN ISVLHGYPPR VQYSLYGSHH VDPTHHQAAC  120
ETPRAQRGLS LTLSSQQQQQ QHRQTLHHVG FGSGPGEDIR VGSGSTASGV TNGVANLVSS  180
KYLKAAQELL DEVVKADSND INTKSQLFSS KKGTSVTDTK AVGESSTGAR EGSDGGGEAS  240
GKRTVELGTA ERQEIQMKKA KLSSMLHEVE QRYRQYHQQM QMVISSFEQA AGIGSAKSYT  300
SLALKTISRQ FRCLKEAIAG QIKAANKSLG EEDSVSGVGR FEGSRLKFVD HHLRQQRALQ  360
QLGMIQHPSN NAWRPQRGLP ERAVSVLRAW LFEHFLHPYP KDSDKHMLAK QTGLTRSQVS  420
NWFINARVRL WKPMVEEMYA EEMKEQGKNM GSMEKTPNLD ENIDDSASKS TSNQEKIPMG  480
GGGLDNYHLN PSHNGDVEGV TGMQESPKRL RTSDGTMMQP INEGFSLNEK MKILEERQGI  540
RSDGGYPFMV SFGQYQMDEM SRFNVAVSDQ ELLTQRFSGN NNGVSLTLGL PHCDSLSSTH  600
HQGFMQTHHG IQIGRSVKIG ETEEYGNSAI NGGSGSTATA HSSAAAAAAY NGMNIQNQKR  660
YVAQLLPDFV A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	9e-17	379	436	1	58	Homeobox protein Meis1
4xrs_B	9e-17	379	436	1	58	Homeobox protein Meis1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.4524	0.0	flower\| leaf\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00141844001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013683591.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_022554766.1	0.0	BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	0.0	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A397ZVY6	0.0	A0A397ZVY6_BRACM; Uncharacterized protein
STRING	Bo3g029830.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5008	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	0.0	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]