PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00141747001
Common NameGSBRNA2T00141747001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 370aa    MW: 41201.7 Da    PI: 5.0106
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00141747001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.0003315356854
                          HHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
                  HLH   8 rErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 
                          +E+ R d+i++a+  L +++P a      K ++    L +A++Y+k L
  GSBRNA2T00141747001 315 NEQSRKDEIRTALKILESIVPGA------KgNEALLLLDEAIDYLKLL 356
                          69********************9......5599999*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.921307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-5315359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-4316358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MVCQSPGKTR FRALKYETGD ANRPAIVVRV IACFQPMDNC QAEYFRLLLK PCLYSLKLPN  60
CSKSMPLDTR QRDLPPQPCF EDIAAPSLPE LGKLYAAELR APYLQPPPPL QSLLWSHDKR  120
FSLSDMRSWC AAAAATTPHG ALESSQKGLM IFDQSGNQTR LLRCSFPLRF PSLAAAEPVK  180
LNLSELQHGL EKGFREDHVT LKEFDEKNCV NGKESEMHED TEEINALLYS DDDYNDDCES  240
DDDDEVMSTG HSPYQVCNKR ALEDIDSPCK RQKLLDKVEN ISVSSSSSLV GSKSSTKLPE  300
SNISTKEDTG SGLSNEQSRK DEIRTALKIL ESIVPGAKGN EALLLLDEAI DYLKLLKRDL  360
ISTEIKNHC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.215592e-67leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, and flowers. {ECO:0000269|PubMed:16936072}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Involved in stem elongation, probably by regulating a subset of genes involved in this process. {ECO:0000269|PubMed:16936072}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00141747001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0082685e-79AB008268.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSJ1.
GenBankAY0625615e-79AY062561.1 Arabidopsis thaliana Unknown protein (At5g64340; MSJ1.18) mRNA, complete cds.
GenBankAY0933335e-79AY093333.1 Arabidopsis thaliana unknown protein (At5g64340) mRNA, complete cds.
GenBankCP0026885e-79CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013722821.10.0transcription factor SAC51-like
SwissprotQ9FMF41e-124SAC51_ARATH; Transcription factor SAC51
TrEMBLA0A0D3BF510.0A0A0D3BF51_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BBN70.0A0A3P6BBN7_BRAOL; Uncharacterized protein
STRINGBo3g101410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55461014
Publications ? help Back to Top
  1. Imai A, et al.
    The dwarf phenotype of the Arabidopsis acl5 mutant is suppressed by a mutation in an upstream ORF of a bHLH gene.
    Development, 2006. 133(18): p. 3575-85
    [PMID:16936072]
  2. Imai A,Komura M,Kawano E,Kuwashiro Y,Takahashi T
    A semi-dominant mutation in the ribosomal protein L10 gene suppresses the dwarf phenotype of the acl5 mutant in Arabidopsis thaliana.
    Plant J., 2008. 56(6): p. 881-90
    [PMID:18694459]
  3. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Cai Q, et al.
    The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis.
    Plant Cell Physiol., 2016. 57(8): p. 1583-92
    [PMID:27388339]
  6. Yamamoto M,Takahashi T
    Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis.
    Plant Signal Behav, 2017. 12(1): p. e1276685
    [PMID:28045577]