PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00141208001 | ||||||||
Common Name | GSBRNA2T00141208001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 589aa MW: 65535.7 Da PI: 6.7495 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.5 | 1.2e-09 | 316 | 353 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + GSBRNA2T00141208001 316 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 353 554459******************************88 PP | |||||||
2 | BELL | 99.1 | 3.6e-32 | 209 | 275 | 1 | 67 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkda 67 erqe+q+kkakL s+l+eV++rY+qy++q+q+vissFe++ag+gsak+YtslAlk+iSr+ + + + GSBRNA2T00141208001 209 ERQEIQMKKAKLSSMLHEVEQRYRQYHQQMQMVISSFEQAAGIGSAKSYTSLALKTISRQLKFVDHQ 275 79**********************************************************9877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 9.0E-52 | 140 | 273 | IPR006563 | POX domain |
Pfam | PF07526 | 7.1E-38 | 146 | 270 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.26 | 294 | 357 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-9 | 297 | 361 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.16E-12 | 297 | 358 | No hit | No description |
SuperFamily | SSF46689 | 5.13E-17 | 298 | 364 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-29 | 300 | 363 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.3E-18 | 314 | 353 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 589 aa Download sequence Send to blast |
MAAYFHGNPP EISAGSDGSL QTLILMNPTT YVQYTQQDDD SNNNNNDSNN TNNNNSFVFL 60 NSHAPPQNSS QQFIGIPLSG HEAASITSAD SISTPRAHQG LFLTLSSQQQ QQQHQNQHQT 120 FHHVGLGSGP GQDMWVGSGS TGIATLVSPK YLEAAQELLD EVVKADSNDI NTRSQLFSSK 180 KGTTETDNKA VGESSTASEK NKVELGTVER QEIQMKKAKL SSMLHEVEQR YRQYHQQMQM 240 VISSFEQAAG IGSAKSYTSL ALKTISRQLK FVDHQLRQQR ALQQLGMIQH HPSNNAWRPQ 300 RGLPERAVSV LRAWLFEHFL HPYPKDSDKH MLAKQTGLTR SQVSNWFINA RVRLWKPMVE 360 EMYVEEMKEQ GKNMGSMEKT PNLDQNNEDS ASKSASNQEK SPIGGRGVDN YHLNPNQNGE 420 LEGVTGMQGS PKRLRTNEET MMQPNVDFTS NEKLTMKILE ERQEIRSDGG YPFMGNFGQY 480 QMDEMSRFDV AVSDQELLAQ RYSGNNNGVS LTLGLPHCDS LSSTRHQGFM QTHHGIPIGR 540 RVKIGETEEY GAANISAATV HSSAAAYSAM NIQNQKRYVA QLLPDFVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-16 | 303 | 361 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-16 | 303 | 361 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.24422 | 1e-130 | flower| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00141208001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189380 | 0.0 | AC189380.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB050K06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013636675.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 isoform X2 | ||||
Refseq | XP_013636676.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 isoform X2 | ||||
Refseq | XP_013636677.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 isoform X2 | ||||
Swissprot | Q9SJ56 | 0.0 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A0D3BRP7 | 0.0 | A0A0D3BRP7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6CES5 | 0.0 | A0A3P6CES5_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g036190.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5008 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 0.0 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
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