PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00141126001
Common NameGSBRNA2T00141126001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 185aa    MW: 19884.2 Da    PI: 4.3396
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00141126001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-181666255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr++k++ +Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  GSBRNA2T00141126001 16 LYKGVRQRKNSDKWVSEIREPR----KpNRIWLGTFSTPEMAAIAYDVAALALKG 66
                         69******************94....478***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-111566IPR001471AP2/ERF domain
CDDcd000187.91E-281576No hitNo description
PROSITE profilePS5103220.8241674IPR001471AP2/ERF domain
SMARTSM003801.8E-301680IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-271676IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-191676IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MNIPGTSKEN SGRHPLYKGV RQRKNSDKWV SEIREPRKPN RIWLGTFSTP EMAAIAYDVA  60
ALALKGTQTG LNFPNSASSL PVPASMSPGD IQAAAASAAA AFGAARDAIV VANNSSVERS  120
NVMMNGSYEN TNGFMDEDLI FDMPNVVMNM AEGMLLSLPC QFTFDAASEA DDYAGEDDYL  180
WNFT*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00141126001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635223.11e-133PREDICTED: ethylene-responsive transcription factor ERF024-like
RefseqXP_013688931.11e-133ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR04e-84ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A0D3BRI71e-128A0A0D3BRI7_BRAOL; Uncharacterized protein
STRINGBo4g034600.11e-129(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.18e-73ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]