PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00140440001

Common Name

GSBRNA2T00140440001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 305aa MW: 35010.9 Da PI: 6.7

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00140440001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.2	5.8e-18	115	167	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k GSBRNA2T00140440001 115 KKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 167 4568889*********************************************9 PP
2	HD-ZIP_I/II	125.2	2.9e-40	113	204	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekk+rl+ eqv++LE+sFe +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkql +dy++Lk+ +d lk++n++L++++++L++e GSBRNA2T00140440001 113 EKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLQRDYDSLKQLFDVLKSDNDSLQAHNKKLHAE 202 69**************************************************************************************99 PP HD-ZIP_I/II 91 lk 92 + GSBRNA2T00140440001 203 VV 204 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.74E-19	101	171	IPR009057	Homeodomain-like
SMART	SM00389	8.1E-17	112	173	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.552	113	169	IPR001356	Homeobox domain
CDD	cd00086	1.69E-16	114	170	No hit	No description
Pfam	PF00046	3.1E-15	115	167	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.4E-19	117	177	IPR009057	Homeodomain-like
PRINTS	PR00031	1.1E-5	140	149	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	144	167	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	149	165	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.1E-12	169	208	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MYMYEEEKNN IVNSQEGLRL EMAFPQHGFM FQQLHEDNAH HLPSPTSLSS CPPHLFYGGG 60 GNYMMNRSMS FTGVSDHHHL TQKSPTTMNM NDQDQVGDED NLSDDGSHMM LGEKKKRLNL 120 EQVRALEKSF ELGNKLEPER KMQLAKALGL QPRQIAIWFQ NRRARWKTKQ LQRDYDSLKQ 180 LFDVLKSDND SLQAHNKKLH AEVVALKKQD LKESGKIKRE SAEASWSNNE STENNNNSSE 240 GLKDLFPSTI RSVTTSTTSA HIEHQMVQDQ GFCNMFNGID ETTSAGYWAW PDQQQQHHNH 300 HHFN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	169	RRARWKTKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in flowers, and in the cortex of the root and the stem. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00140440001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK229364	0.0	AK229364.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-61-C06.
GenBank	BT044059	0.0	BT044059.1 Arabidopsis thaliana unknown protein (At5g15150) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013626571.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT7-like
Swissprot	Q00466	0.0	HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBL	A0A0D3B179	0.0	A0A0D3B179_BRAOL; Uncharacterized protein
STRING	Bo3g010120.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3095	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15150.1	1e-149	homeobox 3

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]