PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00140396001
Common NameGSBRNA2T00140396001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 234aa    MW: 26965.6 Da    PI: 6.3963
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00140396001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.8e-131462148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                         rg+WT eEd +l + +   G ++W+ +++  g + R++k+c++rw +yl
  GSBRNA2T00140396001 14 RGPWTIEEDHRLMNFILNNGIHCWRIVPKLAGcLLRCGKSCRLRWINYL 62
                         89*********************************************97 PP
2Myb_DNA-binding56.94.9e-1868111146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg +T  E+e++ +++ qlG++ W++Ia++++ gRt++++k++w++
  GSBRNA2T00140396001  68 RGGFTDAEEERIMELHSQLGNR-WSKIASHFP-GRTDNEIKNHWNT 111
                          788*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-19565IPR009057Homeodomain-like
PROSITE profilePS5129413.453962IPR017930Myb domain
SuperFamilySSF466894.87E-2711109IPR009057Homeodomain-like
SMARTSM007172.1E-51364IPR001005SANT/Myb domain
PfamPF002493.8E-111462IPR001005SANT/Myb domain
CDDcd001678.33E-41662No hitNo description
PROSITE profilePS5129426.56763117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2666118IPR009057Homeodomain-like
SMARTSM007171.9E-1567115IPR001005SANT/Myb domain
PfamPF002491.5E-1568111IPR001005SANT/Myb domain
CDDcd001671.45E-1071111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRRPCCEKI GLKRGPWTIE EDHRLMNFIL NNGIHCWRIV PKLAGCLLRC GKSCRLRWIN  60
YLRPDLKRGG FTDAEEERIM ELHSQLGNRW SKIASHFPGR TDNEIKNHWN TKIKKKMKHL  120
GLDPATHEPM NNITDQTESN QITKPNMCST IKEGEETKEQ TLKDEVDIGS LFEMQGNEIS  180
ISSSSLYSNI SRSESSSNFA EDSISLEQWD LTYMTDPLVP WDFFTNLDDN IFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28121175108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in chalaza of mature seeds, cotyledons, rosette leaves, cauline leaves, veins of stems, mature siliques, sepals and styles. Expressed at low levels in roots. {ECO:0000269|PubMed:23660402}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00140396001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196221e-177AY519622.1 Arabidopsis thaliana MYB transcription factor (At5g14340) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627652.11e-156PREDICTED: myb-related protein 315-like
RefseqXP_013714181.11e-156myb-related protein 315-like
SwissprotQ9C7U76e-70MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A3P6AFT21e-173A0A3P6AFT2_BRAOL; Uncharacterized protein
STRINGBo3g009730.11e-155(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-119myb domain protein 40
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]