PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00140350001
Common NameGSBRNA2T00140350001, LOC106431084
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 265aa    MW: 30066.4 Da    PI: 9.4588
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00140350001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.71.8e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien   rqvtfskRr+g+lKKA+ELSvLCdaevavi+fs++gkl+e+ss
  GSBRNA2T00140350001  9 KRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSS 59
                         79***********************************************96 PP
2K-box78.61.6e-26821739100
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                           + + +++ ++e++ Lk+ei++Lq+++ +++G+ L+ LslkeLq+Le+qL+ sl ++R++K+ ll++q+ee++ ke++++ en++Lr+++
  GSBRNA2T00140350001  82 INRKAENQECTEVDLLKDEISMLQEKHLQMQGKRLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQLEESRLKEQRAELENETLRRQV 171
                          4455566789*******************************************************************************9 PP

                K-box  99 ee 100
                          +e
  GSBRNA2T00140350001 172 QE 173
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-43160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.8161IPR002100Transcription factor, MADS-box
CDDcd002651.62E-42277No hitNo description
SuperFamilySSF554552.09E-31274IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-303859IPR002100Transcription factor, MADS-box
PfamPF014867.3E-1686171IPR002487Transcription factor, K-box
PROSITE profilePS5129712.58687177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAHELSVLCD AEVAVIVFSK SGKLFEFSST  60
RCMKKTLLRY GNYQISSDVP GINRKAENQE CTEVDLLKDE ISMLQEKHLQ MQGKRLNLLS  120
LKELQHLEKQ LNFSLISVRE RKELLLTKQL EESRLKEQRA ELENETLRRQ VQELRSFLPS  180
INQHYVPSYI KCFAIDPKKS LLSNTCLGDI NCSLQNTNSD TTLQLGLPGE AHDTRKNEGD  240
RESPSSDSVT TSTTRATAQR ISLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-22189194MEF2C
5f28_B2e-22189194MEF2C
5f28_C2e-22189194MEF2C
5f28_D2e-22189194MEF2C
6byy_A2e-22173172MEF2 CHIMERA
6byy_B2e-22173172MEF2 CHIMERA
6byy_C2e-22173172MEF2 CHIMERA
6byy_D2e-22173172MEF2 CHIMERA
6bz1_A2e-22173172MEF2 CHIMERA
6bz1_B2e-22173172MEF2 CHIMERA
6bz1_C2e-22173172MEF2 CHIMERA
6bz1_D2e-22173172MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00140350001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013727349.10.0agamous-like MADS-box protein AGL15 isoform X1
SwissprotQ392951e-172AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A0D3B1011e-178A0A0D3B101_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AFE01e-178A0A3P6AFE0_BRAOL; Uncharacterized protein
STRINGBo3g009340.11e-179(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75182538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-125AGAMOUS-like 15
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]