PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00140166001
Common NameGSBRNA2T00140166001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-other
Protein Properties Length: 303aa    MW: 33774.3 Da    PI: 6.7983
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00140166001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.16.3e-082422742254
                          SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           +yp++e++++L +++gL+ +q+ +WF N+R +
  GSBRNA2T00140166001 242 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 274
                          58*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.0E-19112156IPR005540KNOX1
PfamPF037906.9E-18115155IPR005540KNOX1
SMARTSM012566.3E-26168224IPR005541KNOX2
PfamPF037919.7E-20174223IPR005541KNOX2
SMARTSM003892.9E-4217282IPR001356Homeobox domain
SuperFamilySSF466893.38E-13230282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-19231279IPR009057Homeodomain-like
PROSITE profilePS5007111.418232278IPR001356Homeobox domain
PfamPF059201.9E-17236274IPR008422Homeobox KN domain
CDDcd000868.92E-10241279No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAFHNNHFNH FTDQQHQPPL PPPPQQQEHH FHESTPPNWL LRSDNNFLNL HTPASAAATS  60
SDSPSSAAAN QWLSRSSSFL QRGGGASNNN AGSGDAMENI TGGEESMIGE NARHKAEILS  120
HPLYEQLLSA HVACLRIATP VDQLPRIDAQ LAQSQNVVAK YSTLDAASQG LISGDEKELD  180
HFMSHYVLLL CSFKEQLQQH VRVHAMEAVM ACWEIEQSLQ SFTAIGSFHA QLQTDFISHS  240
KWPYPTEEDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP SSSTASKNKR RSNAGENSGR  300
ER*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00140166001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533381e-139AK353338.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622359.11e-135PREDICTED: homeobox protein knotted-1-like 4 isoform X1
RefseqXP_013661884.11e-135homeobox protein knotted-1-like 4 isoform X1
RefseqXP_022554307.11e-135homeobox protein knotted-1-like 4 isoform X1
SwissprotP480011e-112KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLA0A0D3B0K31e-134A0A0D3B0K3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AKQ11e-134A0A3P6AKQ1_BRAOL; Uncharacterized protein
STRINGBo3g006870.11e-135(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-109KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]