PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00139568001 | ||||||||
Common Name | GSBRNA2T00139568001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Nin-like | ||||||||
Protein Properties | Length: 249aa MW: 29078 Da PI: 6.5363 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 75 | 9e-24 | 126 | 176 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +s e++s y+++pi++AAkeL+++lT+LK++CR +GI+RWPhRk sl GSBRNA2T00139568001 126 AKPLSKETISLYYDMPIAQAAKELNIGLTLLKKKCRDLGIQRWPHRKFMSL 176 57899******************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.859 | 107 | 196 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.7E-19 | 129 | 176 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051302 | Biological Process | regulation of cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MMMNSFSNLE CDKVFGKEDK PFSFLEYFSY QSEFTNNFFG LEDEIISSGN YDYYLPSASS 60 FLALPDLEPI SIVSHEDILN DYGSVSWTEK ESVFDEHQRE DFDLVKETET IKKRAREECA 120 YSSYAAKPLS KETISLYYDM PIAQAAKELN IGLTLLKKKC RDLGIQRWPH RKFMSLDNLI 180 ENVKEKLEKG EGNADEQRKK LEKLTKEKKR MKESPDLEYE DKTKRLRQAC YKANHKRKRR 240 LVMSTSTT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00139568001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC011809 | 9e-46 | AC011809.2 Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 9e-46 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013601512.1 | 1e-172 | PREDICTED: protein RKD1 | ||||
Swissprot | Q9M9U9 | 2e-94 | RKD1_ARATH; Protein RKD1 | ||||
TrEMBL | A0A0D3DQ95 | 0.0 | A0A0D3DQ95_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FTF0 | 0.0 | A0A3P6FTF0_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g068090.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3966 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 5e-89 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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