PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00139521001 | ||||||||
Common Name | GSBRNA2T00139521001, LOC106431859 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 1021aa MW: 113085 Da PI: 6.6471 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.5 | 6.1e-24 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F GSBRNA2T00139521001 126 FCKTLTASDTSSHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFV 213 99*****************************954.4444.48************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++ +l+++++r+ GSBRNA2T00139521001 214 --RDEKSQLMLGIRRA 227 ..4567778****997 PP | |||||||
2 | Auxin_resp | 114 | 1.4e-37 | 252 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F++++nPras+seFvv+++k++kal+ +vs+ mRf+m+feted+ rr++Gtv+gvsdldpvrW++S+Wr+L+ GSBRNA2T00139521001 252 AAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLVMRFRMMFETEDCGVRRYMGTVTGVSDLDPVRWKGSQWRNLQ 334 799******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.03E-43 | 116 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-41 | 120 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.40E-22 | 125 | 226 | No hit | No description |
SMART | SM01019 | 3.9E-25 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-22 | 126 | 227 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.689 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.8E-32 | 252 | 334 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.9E-9 | 890 | 978 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.855 | 892 | 985 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.67E-8 | 906 | 970 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1021 aa Download sequence Send to blast |
MKAPSNGFHP NSTEGEKKPI NSQLWHACAG PMVSLPPVGS LVVYFPQGHS EQVAASMQKQ 60 TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKLNR 120 QPTEFFCKTL TASDTSSHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLLAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS 240 SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLVMRFRMMF 300 ETEDCGVRRY MGTVTGVSDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP 360 FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGEE FGMKDAQSSM FPGLSLVQWM 420 GMQQNNTLSA GYTTTQLPSA YNLPNNFAAN DPSKLFNFQS PNLSPVNSQF NKPNMVSSHI 480 SQQMQVQPAM VKSQQQEQQK VQMSHQQLQQ GVFNAGCANN GVSVVSCQNQ STGFSQSELQ 540 QQSMLSNGSA KMNNQNKGSS QMTLQELQFQ QQMELHNSSQ NQQEQSSMHS LQQNPQQLQM 600 QQQPSQPSPS QKLQLQLLQK LQQQQQSIPP VSSSLQPQLS AALQQTQSHQ LQQLLSSQNQ 660 QPFSASTFMQ PPQVQLSHHQ QQGHMNNKPL VAAGRRSHSG HTDGEAPPSC STSPSAKNTI 720 HDNISPTNFL SRNQQQGQAV SVPEPDPVQE LYTKTESRNN LRSAADQINV STAGTTYCPD 780 AVGTAQQQQQ AFPLPSFGDC QRNNLAFAGN LEAVTTSDAL YSQKDFQNLV PTYGNAPRDI 840 ETELSSAAIS SQSFGIPSIP FKSGGSNEIG GVNDSGIMNG GGLWPNQAQR MRTYTKVQKR 900 GSVGRSIDVT RYSGYEELRN DLARMFGIEG QLEDPRPSDW KLVYTDHEND ILLVGDDPWE 960 EFVNCVQNIK ILSSVEVQQM SLDGDLAAIP ATNQVCSETD SGNAWKVHYE DTSAAASFNR 1020 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-170 | 15 | 355 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00139521001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and ethylene. {ECO:0000269|PubMed:16461383}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979483 | 0.0 | JN979483.1 Brassica rapa subsp. pekinensis auxin response factor 19-1 (ARF19-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013605108.1 | 0.0 | PREDICTED: auxin response factor 19-like | ||||
Refseq | XP_013728152.1 | 0.0 | auxin response factor 19 | ||||
Swissprot | Q8RYC8 | 0.0 | ARFS_ARATH; Auxin response factor 19 | ||||
TrEMBL | A0A0D3DQC4 | 0.0 | A0A0D3DQC4_BRAOL; Auxin response factor | ||||
STRING | Bo8g068380.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2629 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Entrez Gene | 106431859 |