PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00139490001 | ||||||||
Common Name | GSBRNA2T00139490001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 191aa MW: 22264.3 Da PI: 9.9588 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.6 | 1.1e-09 | 144 | 179 | 19 | 52 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrR 52 Fe ++yp+++e+ LAk+++L+++qV +WF N R GSBRNA2T00139490001 144 FEHflHPYPKESEKMMLAKQIRLSKNQVANWFINAR 179 554458****************************99 PP | |||||||
2 | BELL | 118.2 | 3.8e-38 | 2 | 73 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk kLl++l+eVdkrY+qy++q+++++ssFe+vag gsakpYts+Al++iS hFr+L+dai+e+i GSBRNA2T00139490001 2 ERQELQSKKDKLLTMLDEVDKRYNQYYHQMEALASSFEVVAGFGSAKPYTSVALNRISCHFRSLRDAIKEHI 73 79*******************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 7.3E-9 | 1 | 71 | IPR006563 | POX domain |
Pfam | PF07526 | 9.5E-33 | 1 | 69 | IPR006563 | POX domain |
SuperFamily | SSF46689 | 3.64E-13 | 117 | 179 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.5E-20 | 124 | 185 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.58E-7 | 125 | 179 | No hit | No description |
SMART | SM00389 | 9.6E-4 | 125 | 189 | IPR001356 | Homeobox domain |
Pfam | PF05920 | 1.8E-15 | 142 | 179 | IPR008422 | Homeobox KN domain |
PROSITE profile | PS50071 | 10.608 | 144 | 185 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MERQELQSKK DKLLTMLDEV DKRYNQYYHQ MEALASSFEV VAGFGSAKPY TSVALNRISC 60 HFRSLRDAIK EHIQVIREKL GEKGGELSLD EQQGGERIPI LRYLDQRLRQ QRTFHQQIGM 120 VRPSWRPQRG LPESFVSGLR AWLFEHFLHP YPKESEKMML AKQIRLSKNQ VANWFINARS 180 PNSTNQEDSS * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.20069 | 5e-35 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00139490001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY570508 | 0.0 | AY570508.1 Arabidopsis thaliana BEL1-like homeodomain 5 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013729468.1 | 1e-124 | BEL1-like homeodomain protein 10 isoform X2 | ||||
Swissprot | Q9FXG8 | 1e-107 | BLH10_ARATH; BEL1-like homeodomain protein 10 | ||||
TrEMBL | A0A0D3DQE9 | 1e-132 | A0A0D3DQE9_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g068630.1 | 1e-133 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3820 | 19 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19700.3 | 3e-98 | BEL1-like homeodomain 10 |
Publications ? help Back to Top | |||
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