PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00139440001
Common NameGSBRNA2T00139440001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 133aa    MW: 14689.6 Da    PI: 7.7686
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00139440001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601439.1e-4512110199
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrrkC++dCv+apyfp e+pkkfanvh++FGasnv+k+l+++++++reda++sl+yeAear+rdPvyG+vg i+ lq+q+  l
  GSBRNA2T00139440001  12 PCAACKFLRRKCTSDCVFAPYFPPEEPKKFANVHRIFGASNVSKILQEVEPHQREDAVNSLAYEAEARLRDPVYGCVGAISVLQRQVLGL 101
                          7***************************************************************************************** PP

               DUF260  91 kaelallke 99 
                          + el+++++
  GSBRNA2T00139440001 102 QRELEETNA 110
                          ****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.56911112IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-4412109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MSSSYSNYTN SPCAACKFLR RKCTSDCVFA PYFPPEEPKK FANVHRIFGA SNVSKILQEV  60
EPHQREDAVN SLAYEAEARL RDPVYGCVGA ISVLQRQVLG LQRELEETNA DIMRYASCLG  120
GETTSVYGAR RG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-59101269126LOB family transfactor Ramosa2.1
5ly0_B5e-59101269126LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00139440001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594213.13e-94PREDICTED: LOB domain-containing protein 25-like
SwissprotQ8L8Q39e-86LBD25_ARATH; LOB domain-containing protein 25
TrEMBLA0A3P6E3P01e-93A0A3P6E3P0_BRAOL; Uncharacterized protein
STRINGBo7g085860.11e-93(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.14e-88LOB domain-containing protein 25
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]