PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00139105001
Common NameGSBRNA2T00139105001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 511aa    MW: 56491.8 Da    PI: 9.0044
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00139105001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.72.4e-49161402128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                           pGfrFhPtdeel+ +yL++kve+k+++l e ik++diyk++PwdLp+  + +e+ewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+
  GSBRNA2T00139105001  16 LPGFRFHPTDEELLGFYLRRKVENKPIKL-ELIKQIDIYKFDPWDLPRVSSVGENEWYFFCMRGRKYKNSVRPNRVTGSGFWKATGIDKP 104
                          69***************************.99***************77777999*********************************** PP

                  NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          v+s + + +glkk+Lv+y g+a kg+ktdW+mhe+rl
  GSBRNA2T00139105001 105 VYS-NFNCIGLKKSLVYYLGSAGKGSKTDWMMHEFRL 140
                          ***.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-5615163IPR003441NAC domain
PROSITE profilePS5100553.87715164IPR003441NAC domain
PfamPF023651.4E-2417140IPR003441NAC domain
SuperFamilySSF1178562.01E-33330459No hitNo description
PROSITE profilePS5174236.725330467IPR005175PPC domain
Gene3DG3DSA:3.30.1330.802.6E-34333465No hitNo description
CDDcd113787.12E-21334445IPR005175PPC domain
PfamPF034796.7E-26334446IPR005175PPC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MSCEGKDQEE EDEAILPGFR FHPTDEELLG FYLRRKVENK PIKLELIKQI DIYKFDPWDL  60
PRVSSVGENE WYFFCMRGRK YKNSVRPNRV TGSGFWKATG IDKPVYSNFN CIGLKKSLVY  120
YLGSAGKGSK TDWMMHEFRL PTTTKTDSTA QQAEVWTLCR IFKRVTHHRN PTIIQQNRKP  180
VITLTDSCSK TSSLDSDHTS HRVVDSLPHK LHEPQTQNPY WNQLTTVGFN QPTYTCHDNN  240
FLSFLNINGG DFIGDSASWD ELRSSLLPLR NHEAAERVNN NNNNNSLKAL PKAVQPVSSI  300
DGGMVKRPRG RPAGSKNKPK PPIIVTHDSP NSLRAHAVEI SSGNDICEAL SDYARRKQRG  360
LCILSANGCV TNVTLRQPAS SGAIVTLHGR FEILSLLGSI LPPPAPLGIT GLTIYLAGHQ  420
GRVVGGGVVG GLIASGPVVI MAASFMNAVF DRLPLDDDES ASMQNQQYYQ NGRSRPLDDI  480
HGLSQNLLTN GNSGSDGYSW GAAQRAMSKP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-501716419165NO APICAL MERISTEM PROTEIN
1ut4_B3e-501716419165NO APICAL MERISTEM PROTEIN
1ut7_A3e-501716419165NO APICAL MERISTEM PROTEIN
1ut7_B3e-501716419165NO APICAL MERISTEM PROTEIN
3swm_A4e-501716422168NAC domain-containing protein 19
3swm_B4e-501716422168NAC domain-containing protein 19
3swm_C4e-501716422168NAC domain-containing protein 19
3swm_D4e-501716422168NAC domain-containing protein 19
3swp_A4e-501716422168NAC domain-containing protein 19
3swp_B4e-501716422168NAC domain-containing protein 19
3swp_C4e-501716422168NAC domain-containing protein 19
3swp_D4e-501716422168NAC domain-containing protein 19
4dul_A3e-501716419165NAC domain-containing protein 19
4dul_B3e-501716419165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.111200.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00139105001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9716180.0JX971618.1 Brassica oleracea cultivar Gold Acer male sterility related AT-hook DNA binding protein (MF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133561.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK551e-163NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A3P5ZII00.0A0A3P5ZII0_BRACM; Uncharacterized protein
STRINGBo3g036290.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-166NAC domain containing protein 42
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  3. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  4. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  5. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  6. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]