PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00139062001

Common Name

GSBRNA2T00139062001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 896aa MW: 98711 Da PI: 5.2812

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00139062001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.3	7.2e-29	578	628	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ GSBRNA2T00139062001 578 EKNVSLSVLQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 628 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.768	567	648	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-27	580	628	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.92E-23	785	880	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.4E-24	793	874	No hit	No description
SMART	SM00666	1.2E-25	795	877	IPR000270	PB1 domain
PROSITE profile	PS51745	23.091	795	877	IPR000270	PB1 domain
Pfam	PF00564	2.6E-18	796	876	IPR000270	PB1 domain
CDD	cd06407	1.19E-36	796	876	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 896 aa Download sequence Send to blast
MEHPFASRDK VFGYQDISTE EMDSFSFGSG VRSLISDDMF NSSSNSELVN FDSFSTWCNS 60 PSVSDVLFAQ YGLSTSQSMP FGAITSAHAP ELRAATLPGL TRSFHDMESS YYGEERPSLQ 120 EMISQFDHSL DSVQLSGKRR RVANQKNGFP NLMNCTIPRS LSHSLDEKML KALSLFLESS 180 GSGEGILAQV WTPIKIGDQH VLSTCDQAYL LDPRLSQYRE VSRKFTFASE ANQCSFPGLP 240 GRVFISGVPE WTSNVVYYKT DEYLRMKHAI DNEVRGSIAI PILEASGTTC CAVMELVTSK 300 EKPNFDTEMD SVCRALQAVN LRTSASPRPQ FLSSNQRDAL AEIQDVLRAV CHAHRLPLAL 360 AWIPCSYGKG GKNQSGESCV LCVEETACYV NDTEMEGFVH VCLEHCLREK EGIVGRAFVS 420 NKPLFSSDVK AYDISEYPLV QHARKYGLNA AVAIKLRSTY TGEDDYILEL FLPVSMKGSL 480 EQQLLLDSLS GTMQRICRTL RTVSDIGEAK KEVSKTGVLT ACSGNFQTML SDSELNSTRN 540 IFSDMSSDKD SSGTGSQGTY EQEMSKARTP EKKKSTTEKN VSLSVLQQHF SGSLKDAAKS 600 LGVCPTTLKR ICRQHGIMRW PSRKINKVNR SLRKIQTVLD SVQGVEGGLK FDSTTGEFVA 660 VCPFIKELDT QKDPVRGQED TAQDTSFELL EAKSVDNAIK LEEDIIANGS FVEVDASGQQ 720 WAWMAEQSGF NGNLSSQAIR CSGSINEPNQ SMSCSMSGSS NGSGAVMLRS SSTSMDDSNQ 780 VRTQKSNSSE SGSTTLTVKA TYREDTIRFK FEPSLGCSQL YKEVGKRFKL QEESFQLKYL 840 DDEEEWVMLV TDSDLQECLE ILYGMGKHTV KFLVRDLPAP IGSSAGSNCY LGTGL*

Sequence ? help Back to Top

Protein Sequence Length: 896 aa Download sequence Send to blast

MEHPFASRDK VFGYQDISTE EMDSFSFGSG VRSLISDDMF NSSSNSELVN FDSFSTWCNS  60
PSVSDVLFAQ YGLSTSQSMP FGAITSAHAP ELRAATLPGL TRSFHDMESS YYGEERPSLQ  120
EMISQFDHSL DSVQLSGKRR RVANQKNGFP NLMNCTIPRS LSHSLDEKML KALSLFLESS  180
GSGEGILAQV WTPIKIGDQH VLSTCDQAYL LDPRLSQYRE VSRKFTFASE ANQCSFPGLP  240
GRVFISGVPE WTSNVVYYKT DEYLRMKHAI DNEVRGSIAI PILEASGTTC CAVMELVTSK  300
EKPNFDTEMD SVCRALQAVN LRTSASPRPQ FLSSNQRDAL AEIQDVLRAV CHAHRLPLAL  360
AWIPCSYGKG GKNQSGESCV LCVEETACYV NDTEMEGFVH VCLEHCLREK EGIVGRAFVS  420
NKPLFSSDVK AYDISEYPLV QHARKYGLNA AVAIKLRSTY TGEDDYILEL FLPVSMKGSL  480
EQQLLLDSLS GTMQRICRTL RTVSDIGEAK KEVSKTGVLT ACSGNFQTML SDSELNSTRN  540
IFSDMSSDKD SSGTGSQGTY EQEMSKARTP EKKKSTTEKN VSLSVLQQHF SGSLKDAAKS  600
LGVCPTTLKR ICRQHGIMRW PSRKINKVNR SLRKIQTVLD SVQGVEGGLK FDSTTGEFVA  660
VCPFIKELDT QKDPVRGQED TAQDTSFELL EAKSVDNAIK LEEDIIANGS FVEVDASGQQ  720
WAWMAEQSGF NGNLSSQAIR CSGSINEPNQ SMSCSMSGSS NGSGAVMLRS SSTSMDDSNQ  780
VRTQKSNSSE SGSTTLTVKA TYREDTIRFK FEPSLGCSQL YKEVGKRFKL QEESFQLKYL  840
DDEEEWVMLV TDSDLQECLE ILYGMGKHTV KFLVRDLPAP IGSSAGSNCY LGTGL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	141	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00139062001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022574045.1	0.0	protein NLP8-like isoform X3
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	M4C7X9	0.0	M4C7X9_BRARP; Uncharacterized protein
STRING	Bra000307.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]