PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00138994001

Common Name

GSBRNA2T00138994001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 353aa MW: 38894.2 Da PI: 9.7942

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00138994001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.7	1.2e-21	52	143	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +W+ +e+ aLi+++r+++++l+rg+lk+++Weev++++ +++++qC++k+e+l+kry+ + +++++ ++ +s++++++++ GSBRNA2T00138994001 52 CWSLEETIALIDGYRDKWHALNRGNLKANHWEEVAEAVagncPGVTPKKTAVQCRHKMEKLRKRYRTEIQRARSVpVARFVSSWVHYKRM 141 7***********************************88544444599*********************977999******** PP trihelix 86 ea 87 ea GSBRNA2T00138994001 142 EA 143 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0031	49	115	IPR001005	SANT/Myb domain
Pfam	PF13837	1.1E-19	51	144	No hit	No description
PROSITE profile	PS50090	6.214	53	113	IPR017877	Myb-like domain
SMART	SM00595	7.2E-15	60	149	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MSDPDSPLEQ DPLPVRNQSP PPQPDDSVTD LKIASTPAAV ATKNSRRLPP PCWSLEETIA 60 LIDGYRDKWH ALNRGNLKAN HWEEVAEAVA GNCPGVTPKK TAVQCRHKME KLRKRYRTEI 120 QRARSVPVAR FVSSWVHYKR MEAMEDHPES KPGGGDEERD ELYGGGGSVG RSTPRFFNRN 180 GTAGGSSSSG GIRIRIPTGV SIAQPGPRFP GKIDPKYTAS ASSRLGRGVG GGTSYGARGV 240 RIQEGGGGGE ERAGKRGREM MMMMTTEEEE SDDPMVEIAS AIKLLGDTLL RTEEKKMEMT 300 REIEAMRMEM EMKRTKMILE SQQRIIEAFA KSMSENLEEK KKKARRVSSL PP*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MSDPDSPLEQ DPLPVRNQSP PPQPDDSVTD LKIASTPAAV ATKNSRRLPP PCWSLEETIA  60
LIDGYRDKWH ALNRGNLKAN HWEEVAEAVA GNCPGVTPKK TAVQCRHKME KLRKRYRTEI  120
QRARSVPVAR FVSSWVHYKR MEAMEDHPES KPGGGDEERD ELYGGGGSVG RSTPRFFNRN  180
GTAGGSSSSG GIRIRIPTGV SIAQPGPRFP GKIDPKYTAS ASSRLGRGVG GGTSYGARGV  240
RIQEGGGGGE ERAGKRGREM MMMMTTEEEE SDDPMVEIAS AIKLLGDTLL RTEEKKMEMT  300
REIEAMRMEM EMKRTKMILE SQQRIIEAFA KSMSENLEEK KKKARRVSSL PP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00138994001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189399	0.0	AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013734783.1	0.0	trihelix transcription factor ASIL2-like
TrEMBL	A0A397ZXE9	0.0	A0A397ZXE9_BRACM; Uncharacterized protein
STRING	Bra000360.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8963	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-123	Trihelix family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]