PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00138879001
Common NameGSBRNA2T00138879001, LOC106443689
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YB
Protein Properties Length: 157aa    MW: 17901 Da    PI: 6.8797
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00138879001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB172.35.2e-5447142297
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa+a+lGf+dy+e+l++yl++yr
  GSBRNA2T00138879001  47 KEQDRLLPIANVGRIMKNILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWAMANLGFDDYAEQLRKYLNRYR 136
                          89**************************************************************************************** PP

                NF-YB  92 elegek 97 
                           +ege+
  GSBRNA2T00138879001 137 VIEGER 142
                          ***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.1E-5239147IPR009072Histone-fold
SuperFamilySSF471135.12E-3949146IPR009072Histone-fold
PfamPF008085.5E-2852116IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.1E-198098No hitNo description
PROSITE patternPS0068508399IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.1E-1999117No hitNo description
PRINTSPR006156.1E-19118136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MAGNYHSFEN PIHRFKNYNF GSSSSHHQNH DGLLVEDQQQ EENMMIKEQD RLLPIANVGR  60
IMKNILPPNA KISKEAKETM QECVSEFISF VTGEASDKCH KEKRKTVNGD DICWAMANLG  120
FDDYAEQLRK YLNRYRVIEG ERANHGRGAK LSSPDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4446136191Transcription factor HapC (Eurofung)
4g92_B2e-4446136191Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.228471e-161flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00138879001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7876651e-158KC787665.1 Brassica napus transcription factor subunit NF-YB5 (NF-YB5) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133828.11e-116PREDICTED: nuclear transcription factor Y subunit B-5-like
RefseqXP_022573291.11e-116nuclear transcription factor Y subunit B-5-like
SwissprotO822487e-97NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A397ZZE81e-115A0A397ZZE8_BRACM; Uncharacterized protein
TrEMBLM4C8D41e-115M4C8D4_BRARP; Uncharacterized protein
STRINGBra000462.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.13e-99nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]