PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00138182001
Common NameGSBRNA2T00138182001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 724aa    MW: 80559.5 Da    PI: 8.2092
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00138182001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.36e-18339438198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k+l+ sd+++ gr+vlpkk+ae++  +++++ ++ lt+ d++g++W++++++  +++s++y+l+ G     ++ +L++gD+v+F++ +
  GSBRNA2T00138182001 339 FEKILSVSDAGRVGRMVLPKKCAEAFlpQISQTDGVPLTVHDSTGKEWTFQFRFwvNNNSRMYFLE-GITPCIQSMQLQAGDTVIFSRAD 427
                          89**************************88899999****************99888888889888.********************654 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            e++l +++++
  GSBRNA2T00138182001 428 -PEKKLIMGFRK 438
                          .55556666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-27335443IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-19336438IPR015300DNA-binding pseudobarrel domain
CDDcd100173.51E-20337438No hitNo description
PfamPF023625.3E-15339438IPR003340B3 DNA binding domain
PROSITE profilePS5086311.237339440IPR003340B3 DNA binding domain
SMARTSM010199.1E-15339440IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MLPFPSSSSM TPSSYSARFC FNRECPDFNR ECYRPGWRLR NGDFADLCNR CASAYEQGRF  60
CDIFHQRASG WRCCESCGKR IHCGCIVSAP AFMLLDAGGI ECLTCARKKV SVGPNFRPPP  120
PSFLFQSPIS EKFQDLSIDW NSSTRSYRPP NLSGPSIRQS DRGDCYEFNQ PTSKDKATAY  180
STEKHRGMND LMGKLMSVNS NNHTNSILYN QKAGPNCKVP TCPNVNAAYP PLISLKEGPL  240
VGAQRAFPVT TPVETNGHLG LGGRYLWHKA NSSPLSHLHN DLNNGADSPL ESKNWNFGIH  300
LDTPGKYQVV PRYSPKIPYK NQVLQNLPNE SVSVVTPLFE KILSVSDAGR VGRMVLPKKC  360
AEAFLPQISQ TDGVPLTVHD STGKEWTFQF RFWVNNNSRM YFLEGITPCI QSMQLQAGDT  420
VIFSRADPEK KLIMGFRKAS VAQSSVQETE LNNNRESCTN GDAEPIDIHP PNGKKKSSMT  480
TTRSKRQKVE KGELSELKLT WEEAQGFILP SPNLTPSIIT IEGIEFEEYE DAPIIGKPNT  540
GFGSTCSANK GLLAEQDDEE AKDEAEGLLM SPKSTSKHPR HRNGCACIVC LQSPSGSSPK  600
HGRRCSCTVC DTVRRRRETL LQRKKKQQQS EIENKAHKEM ESPNSDEERH QSVNNSGTTS  660
KDYERHASPP SKAQIDLNFQ PEKDEESPLP RSKTTTKDKS LHHDEARSSS SAHNKLHVDF  720
ADS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-503144421127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1613624RRRRETLLQRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.4660.0seed
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in plant development. {ECO:0000269|PubMed:17158584}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00138182001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601765.10.0PREDICTED: B3 domain-containing transcription factor VAL3
SwissprotO654200.0VAL3_ARATH; B3 domain-containing transcription factor VAL3
TrEMBLA0A0D3A4V60.0A0A0D3A4V6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FXI80.0A0A3P6FXI8_BRAOL; Uncharacterized protein
STRINGBo1g024250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.10.0VP1/ABI3-like 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]