PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00137740001 | ||||||||
Common Name | GSBRNA2T00137740001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 34801.2 Da PI: 9.1404 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156.7 | 9.9e-49 | 22 | 150 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 pGfrFhPtdeelv +yL kkv kk +++e+i+++diyk++PwdLp +++++eke yfF+kr +ky+++ r+nr+t sg+Wkatg dk GSBRNA2T00137740001 22 LPGFRFHPTDEELVGFYLSKKVLLKKpSKIDEIISHIDIYKFDPWDLP-RLRNTEKESYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDK 110 59*******************877764888889***************.7788899********************************** PP NAM 91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+s +++++glkktLv+y g+a kg+ktdW+mhe+rl GSBRNA2T00137740001 111 PVYSDgsSKSVIGLKKTLVYYVGSAGKGSKTDWMMHEFRL 150 ****9666677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 50.636 | 21 | 185 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.22E-50 | 22 | 185 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-24 | 23 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MMGSCDKRRG EQEEEEEQKL KLPGFRFHPT DEELVGFYLS KKVLLKKPSK IDEIISHIDI 60 YKFDPWDLPR LRNTEKESYF FCKRGRKYRN SIRPNRVTGS GFWKATGIDK PVYSDGSSKS 120 VIGLKKTLVY YVGSAGKGSK TDWMMHEFRL PTANDTIPGG STHLNPTPPA MLHAEVWTLC 180 RIFQRNVSSR KYTPDWRELA GGKRVKPQQS KYQEAYISFG DNESTISTNI NIMENKGNYE 240 RNVFQLHQTP HQHQPILMDT ASTTQVDYTG PHSSNHDIHN ITYENWDELR SVVEFAFGPS 300 LS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-44 | 10 | 191 | 5 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-44 | 10 | 191 | 5 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-44 | 10 | 191 | 5 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-44 | 10 | 191 | 5 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-44 | 10 | 191 | 8 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-44 | 10 | 191 | 8 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-44 | 10 | 191 | 8 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-44 | 10 | 191 | 8 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-44 | 10 | 191 | 8 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-44 | 10 | 191 | 8 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-44 | 10 | 191 | 8 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-44 | 10 | 191 | 8 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-44 | 10 | 191 | 5 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-44 | 10 | 191 | 5 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00137740001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026645 | 1e-91 | AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6. | |||
GenBank | CP002686 | 1e-91 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009135261.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 2e-71 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A398A4B8 | 0.0 | A0A398A4B8_BRACM; Uncharacterized protein | ||||
STRING | Bo3g065200.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12910.1 | 1e-162 | NAC family protein |