PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00137647001
Common NameGSBRNA2T00137647001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRF
Protein Properties Length: 367aa    MW: 41523.8 Da    PI: 8.5724
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00137647001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.11.5e-2381124144
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                          d+epgrCrRtDGKkWRCsr++ +++k+CE+H+hrgr+r +k  +
  GSBRNA2T00137647001  81 DPEPGRCRRTDGKKWRCSREAHPDSKYCEKHMHRGRNRAKKALD 124
                          79*************************************99766 PP
2QLQ64.52.7e-221651237
                  QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                         +FT++Q+q+L++Q+l+yKy+++++PvPpeL++ i++
  GSBRNA2T00137647001 16 PFTPTQWQELEHQALIYKYMVSGVPVPPELILSIRR 51
                         9*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.3E-141551IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.3E-161650IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.1431651IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.89881125IPR014977WRC domain
PfamPF088793.3E-2082122IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MMNLSGTSGR TIERPPFTPT QWQELEHQAL IYKYMVSGVP VPPELILSIR RSLDSSLVSR  60
LLPHQSIGWG CYQMGSGRKP DPEPGRCRRT DGKKWRCSRE AHPDSKYCEK HMHRGRNRAK  120
KALDQNQTIA PSTSPSLSFP NKDNPISPTL SSSSSSFIDT YSRFGVGSSN SRGYFNNHSL  180
DYPYPSSCSP KQQQTLEHAS ALSLHQNKSS ISQFNVLASE TDHKDFRHFQ GIGERTFFPE  240
ASKSFQESPY HHQEALATAM NDPYHGSSSD HHHTYSSSSS SRHHHQQQQH FVLGADEFNK  300
PTRTVFSNTP RQGHQEEEEK DSPKIKKSLH HFFGEDWAQI KNTSDSWLDL SSQSRLDTGN  360
LLSYMC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.85464e-74seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}.
UniprotTISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15960617}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00137647001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1803010.0JN180301.1 Brassica rapa subsp. pekinensis growth-regulating factor 5 (GRF5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691573.10.0growth-regulating factor 5-like isoform X2
SwissprotQ8L8A61e-166GRF5_ARATH; Growth-regulating factor 5
TrEMBLA0A398A1D20.0A0A398A1D2_BRACM; Uncharacterized protein
STRINGBra001532.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45672651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-144growth-regulating factor 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]