PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00137641001 | ||||||||
Common Name | GSBRNA2T00137641001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 122aa MW: 13705.9 Da PI: 9.0581 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.5 | 6.3e-40 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+C+kdC+++pyfp ++p kf ++h+++Ga nv+k+l++lp ++r +a++sl +eA++r++dPvyG+vg+i+ lq q++++ GSBRNA2T00137641001 5 RCAACKYLRRRCPKDCIFSPYFPPSDPDKFSYIHRIYGAGNVSKMLQQLPVQTRAEAVESLSFEARCRVEDPVYGCVGIISLLQTQIQKT 94 6***************************************************************************************** PP DUF260 91 kaelallkee 100 ++ la++++e GSBRNA2T00137641001 95 QTLLAKTQAE 104 ***9999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.763 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.4E-39 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MNPKRCAACK YLRRRCPKDC IFSPYFPPSD PDKFSYIHRI YGAGNVSKML QQLPVQTRAE 60 AVESLSFEAR CRVEDPVYGC VGIISLLQTQ IQKTQTLLAK TQAEIAVAQN KQSQSQISEF 120 M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-38 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-38 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00137641001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018483059.1 | 2e-80 | PREDICTED: LOB domain-containing protein 23 | ||||
Swissprot | P59467 | 1e-73 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
TrEMBL | A0A398A7B9 | 4e-83 | A0A398A7B9_BRACM; Uncharacterized protein | ||||
STRING | XP_006401849.1 | 7e-76 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26620.1 | 6e-63 | LOB domain-containing protein 23 |
Publications ? help Back to Top | |||
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