PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00137507001
Common NameGSBRNA2T00137507001, LOC106444056
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 288aa    MW: 33084 Da    PI: 10.2428
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00137507001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.82.2e-1919113199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffk++ ++d ++ ++  +p +f+ ++ +k+  s ++++++++grsWev +  + +++  y+ ++GW++Fv +n L +++fv+F+++g ++
  GSBRNA2T00137507001  19 FFKIFHSADLSSGSMRGIPYDFM-KNVSKEDFSCKMVIRTKWGRSWEVDI--SMNPRFyYMEKSGWNQFVTDNALGSNEFVTFTHNGLMC 105
                          8999999999999999*******.6656778999****************..999999566669********************998899 PP

                          E..EEEEE-S CS
                   B3  90 felvvkvfrk 99 
                          f  +v ++r+
  GSBRNA2T00137507001 106 F--NVNIYRE 113
                          9..8888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-1914115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-1815119IPR015300DNA-binding pseudobarrel domain
CDDcd100172.27E-1618112No hitNo description
SMARTSM010191.6E-2219114IPR003340B3 DNA binding domain
PfamPF023622.0E-1719113IPR003340B3 DNA binding domain
PROSITE profilePS5086313.28119114IPR003340B3 DNA binding domain
SuperFamilySSF1019361.22E-14183274IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-11185275IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.08185279IPR003340B3 DNA binding domain
SMARTSM010194.0E-4188279IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEWNRGFGRV KEERKSLSFF KIFHSADLSS GSMRGIPYDF MKNVSKEDFS CKMVIRTKWG  60
RSWEVDISMN PRFYYMEKSG WNQFVTDNAL GSNEFVTFTH NGLMCFNVNI YRESGKEIVL  120
PHTTTPFSGI KNEEGERSYK DVKKEDESMG GGVGHVEIGE SSRGAALRKK KAEKHKKRKK  180
VKYGVPRFKI TITKSYLRSL PIPTFFEKRY LKSESKVYKI HHSEGDGSWE VLSLVHQAHI  240
VLSRGWVKLA REYPLAVGDR CTFHLVKPTE FVLTSKKAKA IEITISD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175179KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00137507001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013741040.10.0B3 domain-containing protein At3g17010
SwissprotQ9LSP68e-92Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLA0A398A1L90.0A0A398A1L9_BRACM; Uncharacterized protein
STRINGBo3g068590.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.13e-91B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]