PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00137475001

Common Name

GSBRNA2T00137475001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C3H

Protein Properties

Length: 415aa MW: 45022.5 Da PI: 5.9983

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00137475001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.1	4e-10	176	200	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +f ++G+C+yG++CkF H+ GSBRNA2T00137475001 176 GQPSCGNFKAYGFCNYGASCKFDHP 200 6788********************9 PP
2	zf-CCCH	29.1	1.7e-09	220	245	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y+++ C +f +G+C+yG++Ck+ H+ GSBRNA2T00137475001 220 YGQPSCGNFKVYGFCNYGASCKYDHP 245 88999********************9 PP
3	zf-CCCH	33.9	5.2e-11	318	343	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +f ++G CkyG++CkF H+ GSBRNA2T00137475001 318 WGQPACANFKAYGLCKYGASCKFDHP 343 7899*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.709	174	202	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.7E-5	174	201	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-7	176	200	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.1E-4	180	199	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.15E-5	218	246	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.483	219	247	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.0E-4	219	246	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.7E-7	220	245	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.263	317	345	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.3E-5	317	344	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.3E-8	318	343	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.2E-4	323	342	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MQGYFFFFED ISVDLKLDTL CLSLFYCQQD LSVYFISIIG ASGDTDDSAF VVLWDNHHVV 60 TSRPMDSAIM EQPASLITQC QVWICACSPP PSIPCPSYIP CVSVSICGAA SSVCTSSMAC 120 GWVGIMVWIC ACSPPSSLPS PSSIPSVSVS ICDISVDLKL DTFCLSLFYC QQDLFGQPSC 180 GNFKAYGFCN YGASCKFDHP VPVNPYHYAG LTMPSMPTTY GQPSCGNFKV YGFCNYGASC 240 KYDHPVQVNP YHYAGLTMRS LLTAYTIQHP NIRRTLITTN TTAMSRLFLL DRFFHGMWLV 300 SICGAASSDC TSSMACGWGQ PACANFKAYG LCKYGASCKF DHPVPVNPYQ YAGFTMLYMP 360 TAYAPPVSTQ VRITSPPSLS DSTTVSNGDK SAAENKSSET EKQDEIAGLI TKPL*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MQGYFFFFED ISVDLKLDTL CLSLFYCQQD LSVYFISIIG ASGDTDDSAF VVLWDNHHVV  60
TSRPMDSAIM EQPASLITQC QVWICACSPP PSIPCPSYIP CVSVSICGAA SSVCTSSMAC  120
GWVGIMVWIC ACSPPSSLPS PSSIPSVSVS ICDISVDLKL DTFCLSLFYC QQDLFGQPSC  180
GNFKAYGFCN YGASCKFDHP VPVNPYHYAG LTMPSMPTTY GQPSCGNFKV YGFCNYGASC  240
KYDHPVQVNP YHYAGLTMRS LLTAYTIQHP NIRRTLITTN TTAMSRLFLL DRFFHGMWLV  300
SICGAASSDC TSSMACGWGQ PACANFKAYG LCKYGASCKF DHPVPVNPYQ YAGFTMLYMP  360
TAYAPPVSTQ VRITSPPSLS DSTTVSNGDK SAAENKSSET EKQDEIAGLI TKPL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00137475001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009136032.1	1e-154	PREDICTED: zinc finger CCCH domain-containing protein 26-like
TrEMBL	A0A3P5ZYP8	0.0	A0A3P5ZYP8_BRACM; Uncharacterized protein (Fragment)
STRING	Bra001675.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM30609	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32930.2	3e-29	zinc finger nuclease 2

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]