PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00137457001 | ||||||||
Common Name | GSBRNA2T00137457001, LOC106444110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 425aa MW: 48328.1 Da PI: 8.4987 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126.2 | 3.4e-39 | 154 | 321 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................s 66 + ++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i+++t++ GSBRNA2T00137457001 154 PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKITSSlsnplnhggfssceesqtrpalgsmH 243 5799************************************************************98888888777777765555555331 PP TCP 67 sssaseceaesssssasnsssg...........................kaaksaakskksqksaasalnlakesrakarararertrek 129 ++s + + ++ k+k q+++ +l+k++rakar+ra++rt+ek GSBRNA2T00137457001 244 --TSS----------------DlcklssmgtvedrgsntnstetrgnkvDGRSMRGKRKMLQARTPILKKLSKDERAKARERAKDRTKEK 315 ..222................12222222222222233334455677775555555777778888888********************** PP TCP 130 mriknk 135 +++ + GSBRNA2T00137457001 316 LMKRRS 321 998855 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.1E-41 | 155 | 318 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.724 | 156 | 214 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.713 | 298 | 315 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MNNRSFSTTT TISEDYMLFP YNDHYSSQPL LPFNPCSSIN DILIHSNSNI SSNPLDHHYQ 60 FLQAPSSFSQ FEFVPDFALV ASFLPQNNGH NDNQTITTND HNNNHHHHHP SLLPLNNPIG 120 ESLVEPLETI ATHIEDSQRI STSQDPKMNK VKKPSRTDRH SKIKTAKGTR DRRMRLSLDV 180 AKELFGLQDM LGFDKASKTV EWLLTQAKPE IIKITSSLSN PLNHGGFSSC EESQTRPALG 240 SMHTSSDLCK LSSMGTVEDR GSNTNSTETR GNKVDGRSMR GKRKMLQART PILKKLSKDE 300 RAKARERAKD RTKEKLMKRR SQVTVLDAEA HNQHDEIVKN NKSHVNCKSF EATPCQEETE 360 ELLCKNDGFA VCNEFVVNKF NSSFPMPNHH RSQGTVSSIE QRQFMDLHHF LERPRDLMYN 420 YHNM* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in axillary mersitems which appears in the axils of leaves after flowering. During bud vegetative development, down-regulated in the outer layers of the meristem, but accumulates transiently in young leaf primordia. In buds bearing flowers, restricted to the provascular tissue underlying the bud. Accumulates in axillary buds, but disappears at the time of bud outgrowth. {ECO:0000269|PubMed:17307924}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in unelongated axillary buds, and, to a lower extent, in axillary structures such as flowers and siliques. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00137457001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009135583.1 | 0.0 | PREDICTED: transcription factor TCP18 isoform X2 | ||||
Swissprot | A1YKT1 | 0.0 | TCP18_ARATH; Transcription factor TCP18 | ||||
TrEMBL | A0A398A7Z5 | 0.0 | A0A398A7Z5_BRACM; Uncharacterized protein | ||||
STRING | Bra001710.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7269 | 27 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 1e-167 | TCP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106444110 |