PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00136991001
Common NameGSBRNA2T00136991001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 185aa    MW: 20455.4 Da    PI: 7.7244
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00136991001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind43.61.1e-131892495
            GAGA_bind 24 lglqlmssiaerdakirernlalsekkaavaerd.................maflqrdkalaernkalverdnkllalllvenslasal 95
                         +++++ms++a rda++ er++a s+kk+a+a+ d                 +a++qrdkal+er+kal+e+d++++al+++ +sl++al
  GSBRNA2T00136991001  1 MNKKIMSILAKRDAAVLERDQASSAKKEALARPDprcfysflpllalaareEALQQRDKALTERDKALIEKDDAFAALQHHVKSLNFAL 89
                         6899**************************777777777777777777777*****************************999988554 PP
2GAGA_bind90.55.6e-28110179203270
            GAGA_bind 203 lDe.stlPvPvCsCtGalrqCY.kWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLe 270
                          +De  t+ v vC+Ct +l+      GnGGWqS+CCt t+S++PLP+++++r++R++g+KmS+++f++lL+
  GSBRNA2T00136991001 110 FDErRTMQVLVCTCTDSLHISVtNGGNGGWQSSCCTATLSQHPLPQVPNKRHSRVGGKKMSGNVFSRLLS 179
                          454268999*******9997651679******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.6E-6183IPR010409GAGA-binding transcriptional activator
SMARTSM012263.0E-111179IPR010409GAGA-binding transcriptional activator
PfamPF062171.8E-25114179IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MNKKIMSILA KRDAAVLERD QASSAKKEAL ARPDPRCFYS FLPLLALAAR EEALQQRDKA  60
LTERDKALIE KDDAFAALQH HVKSLNFALS EEKCCEGDDD WYCNDVGLIF DERRTMQVLV  120
CTCTDSLHIS VTNGGNGGWQ SSCCTATLSQ HPLPQVPNKR HSRVGGKKMS GNVFSRLLSL  180
AEMI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00136991001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553463e-42AC155346.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH081N08, complete sequence.
GenBankAC1894803e-42AC189480.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB082F21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633652.12e-62PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X1
RefseqXP_013716916.12e-62protein BASIC PENTACYSTEINE4
RefseqXP_013716917.12e-62protein BASIC PENTACYSTEINE4
SwissprotQ8S8C62e-46BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A0D3DW891e-135A0A0D3DW89_BRAOL; Uncharacterized protein
STRINGBo8g101900.11e-135(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.25e-42basic pentacysteine 4
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]