PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00136962001
Common NameGSBRNA2T00136962001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 314aa    MW: 36117.4 Da    PI: 7.2738
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00136962001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.6e-19167217256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ + kl+ge
  GSBRNA2T00136962001 167 LYRGVRQRH-WGKWVAEIRKPRN---RTRLWLGTFDTAEEAAMAYDREAFKLRGE 217
                          59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.02E-34166226No hitNo description
SuperFamilySSF541719.81E-24167225IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-32167225IPR001471AP2/ERF domain
SMARTSM003802.0E-40167230IPR001471AP2/ERF domain
PROSITE profilePS5103223.235167224IPR001471AP2/ERF domain
PRINTSPR003672.3E-11168179IPR001471AP2/ERF domain
PfamPF008473.9E-14168217IPR001471AP2/ERF domain
PRINTSPR003672.3E-11190206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MATAKNKGKS IMSFCTSEVE KMDHEMESEE ALQFKSKDNS GSDMWKPLVG ETSSTTLSQR  60
SLRKIRTIDR HNPYLLSSSC VTPDQPPPPT TAFPFSLAPS NIQNQQLFSY PRQMQMISFG  120
PQRQVYPFLN AHQQQQQHMM QYWRDILNLP LPLQLARPIQ PFSATKLYRG VRQRHWGKWV  180
AEIRKPRNRT RLWLGTFDTA EEAAMAYDRE AFKLRGETAR LNFPDLFLNK QESTPLHQKQ  240
SETPAAAEAS ERGNDDSSVA VGRVSDDTGW AEAWFNAIPE EWGQGSPLWD DYHFPISYNQ  300
KEDHEQDQPP RQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20166224463ATERF1
3gcc_A3e-20166224463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00136962001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress (PubMed:18550687, PubMed:22095047, PubMed:23625358). Induced by salt stress (PubMed:22095047). Induced by abscisic acid (ABA) and heat stress (PubMed:23625358). {ECO:0000269|PubMed:18550687, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602961.10.0PREDICTED: ethylene-responsive transcription factor ERF053
RefseqXP_013710016.10.0ethylene-responsive transcription factor ERF053-like
SwissprotQ9SKT11e-121ERF53_ARATH; Ethylene-responsive transcription factor ERF053
TrEMBLA0A0D3DWB20.0A0A0D3DWB2_BRAOL; Uncharacterized protein
STRINGBo8g102130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-114ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Cheng MC,Hsieh EJ,Chen JH,Chen HY,Lin TP
    CORRECTION. Arabidopsis RGLG2, Functioning as a RING E3 Ligase, Interacts with AtERF53 and Negatively Regulates the Plant Drought Stress Response.
    Plant Physiol., 2016. 170(2): p. 1162-3
    [PMID:26826724]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]