PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00136766001
Common NameGSBRNA2T00136766001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 546aa    MW: 60064.8 Da    PI: 6.9115
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00136766001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM25.15e-0841847073127
                  NAM  73 rknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          + +  t sg+W + g+ k v++kk+ ++g+k++++f    + + ++t W+m+e++
  GSBRNA2T00136766001 418 HVKDETPSGVWVSDGEVKLVKDKKHIVIGMKQSFTFCL--KTNNTQTFWTMEEFQ 470
                          3444699*****************************94..444469********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF549281.91E-4250217IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010215.06853127IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3301.3E-1953133IPR012677Nucleotide-binding alpha-beta plait domain
SMARTSM003608.9E-1654123IPR000504RNA recognition motif domain
PfamPF000761.1E-1155121IPR000504RNA recognition motif domain
CDDcd123526.36E-3455125No hitNo description
Gene3DG3DSA:3.30.70.3302.3E-27134222IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010216.33138216IPR000504RNA recognition motif domain
CDDcd126194.20E-49139213No hitNo description
SMARTSM003601.4E-23139212IPR000504RNA recognition motif domain
PfamPF000761.3E-17140210IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3304.2E-17245336IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549283.26E-19250349IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010214.147259334IPR000504RNA recognition motif domain
CDDcd123541.09E-31259334No hitNo description
SMARTSM003604.1E-15260330IPR000504RNA recognition motif domain
PfamPF000762.9E-10261327IPR000504RNA recognition motif domain
PfamPF023652.7E-4416470IPR003441NAC domain
SuperFamilySSF1019418.76E-11420486IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MQRLKQQQQQ QAMMQQALMQ QQSLYHPGLL TAPQIEPIPS GNLPPGFDPT SCRSVYVGNV  60
HIQVTEPLLQ EVFASTGPVE SCKLIRKEQS SYGFVHYFDR RSAGLAILSL NGRHLFGQPI  120
KVNWAYASGQ REDTSAHFNI FVGDLSPEVT DAMLFSCFSV YPSCSDARVM WDQKTGRSRG  180
FGFVSFRNQQ DAQTAIDEAG GKWLGTRQIR CNWATKGATS GEDKMSSDSK SVVELTSGVS  240
EDGKDASNGD APENNAQYTT VYVGNLGPEV SQVDLHRHFY SLGAGVIEEV RIQRDKGFGF  300
VRYSTHVEAA LAIQLGNTHS YLGGRQMKCS WGSKPTPPGT ASNPLPPPGP APIPGFSASD  360
LLAYERQLAM SKMAGMNPMM HHPQGQHALK QAAMGATGSN QAIYDGGFQN AQQLMYYHVK  420
DETPSGVWVS DGEVKLVKDK KHIVIGMKQS FTFCLKTNNT QTFWTMEEFQ REVDNEGLVL  480
CKIFVKKPPP FKRTTTLKKT HIATDTVMVD ASEEEILGPC VLNREASLPS SDDDDGVLYM  540
LPRTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3md3_A1e-36532161166Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.46640.0flower| microspore-derived embryo| seed
Functional Description ? help Back to Top
Source Description
UniProtHeterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as a component of the pre-mRNA processing machinery. Functions to facilitate the nuclear maturation of plant pre-mRNAs (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00136766001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0857050.0AY085705.1 Arabidopsis thaliana clone 17210 mRNA, complete sequence.
GenBankBT0264770.0BT026477.1 Arabidopsis thaliana At1g17370 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599485.10.0PREDICTED: oligouridylate-binding protein 1B
RefseqXP_022563785.10.0oligouridylate-binding protein 1B-like
SwissprotQ9LQI90.0UBP1B_ARATH; Oligouridylate-binding protein 1B
TrEMBLA0A3P6GYF50.0A0A3P6GYF5_BRAOL; Uncharacterized protein
STRINGBo8g104900.10.0(Brassica oleracea)
Publications ? help Back to Top
  1. Lambermon MH, et al.
    UBP1, a novel hnRNP-like protein that functions at multiple steps of higher plant nuclear pre-mRNA maturation.
    EMBO J., 2000. 19(7): p. 1638-49
    [PMID:10747031]
  2. Lambermon MH, et al.
    UBA1 and UBA2, two proteins that interact with UBP1, a multifunctional effector of pre-mRNA maturation in plants.
    Mol. Cell. Biol., 2002. 22(12): p. 4346-57
    [PMID:12024044]
  3. Arteaga-Vázquez M,Caballero-Pérez J,Vielle-Calzada JP
    A family of microRNAs present in plants and animals.
    Plant Cell, 2006. 18(12): p. 3355-69
    [PMID:17189346]
  4. Peal L,Jambunathan N,Mahalingam R
    Phylogenetic and expression analysis of RNA-binding proteins with triple RNA recognition motifs in plants.
    Mol. Cells, 2011. 31(1): p. 55-64
    [PMID:21120628]
  5. McCue AD,Nuthikattu S,Reeder SH,Slotkin RK
    Gene expression and stress response mediated by the epigenetic regulation of a transposable element small RNA.
    PLoS Genet., 2012. 8(2): p. e1002474
    [PMID:22346759]
  6. McCue AD,Slotkin RK
    Transposable element small RNAs as regulators of gene expression.
    Trends Genet., 2012. 28(12): p. 616-23
    [PMID:23040327]
  7. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  8. Nguyen CC, et al.
    Oligouridylate Binding Protein 1b Plays an Integral Role in Plant Heat Stress Tolerance.
    Front Plant Sci, 2016. 7: p. 853
    [PMID:27379136]
  9. Nguyen CC, et al.
    Overexpression of oligouridylate binding protein 1b results in ABA hypersensitivity.
    Plant Signal Behav, 2017. 12(2): p. e1282591
    [PMID:28112571]