PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00136579001
Common NameGSBRNA2T00136579001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 178aa    MW: 19575.5 Da    PI: 10.7198
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00136579001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind277.75.4e-857177127301
            GAGA_bind 127 reeeklealpieeaaeeakekkkkkkrqr.akkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsC 215
                          ++++++e++p++++++ ++ kk+k +++  ++ +k+kk +k+k+++    ++++++   +r+k  kks dlv+ngv++D+s+lPvPvC+C
  GSBRNA2T00136579001   7 HHHHQTEEHPVKCEPDIVESKKRKPNSKAgGAPTKAKKPRKPKEENG---DSNNANV--SRVKPAKKSFDLVINGVNMDISGLPVPVCTC 91 
                          467889999**999988776666555554045556677777777332...2333333..689**************************** PP

            GAGA_bind 216 tGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          tGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+grKmSqgafkk+LekLa++G++++ p++Lk+hWA+HGtnkfvtir
  GSBRNA2T00136579001  92 TGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKLASDGFNFGSPINLKSHWARHGTNKFVTIR 177
                          *************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012268.0E-873177IPR010409GAGA-binding transcriptional activator
PfamPF062172.3E-808177IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MHMNLHHHHH QTEEHPVKCE PDIVESKKRK PNSKAGGAPT KAKKPRKPKE ENGDSNNANV  60
SRVKPAKKSF DLVINGVNMD ISGLPVPVCT CTGAPQQCYR WGCGGWQSAC CTTNISMHPL  120
PMSTKRRGAR ISGRKMSQGA FKKVLEKLAS DGFNFGSPIN LKSHWARHGT NKFVTIR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.15220.0flower| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in pollen grains, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00136579001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894991e-124AC189499.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086M23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013600190.11e-129PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X2
RefseqXP_013707903.11e-129protein BASIC PENTACYSTEINE2-like isoform X2
SwissprotQ9LDE23e-93BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBLA0A3P6GGD31e-128A0A3P6GGD3_BRAOL; Uncharacterized protein
STRINGBo8g106640.11e-128(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.35e-89basic pentacysteine 2
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Simonini S,Kater MM
    Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance.
    J. Exp. Bot., 2014. 65(6): p. 1455-65
    [PMID:24482368]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]