PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00136578001 | ||||||||
Common Name | GSBRNA2T00136578001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 222aa MW: 25207.5 Da PI: 6.253 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 34.2 | 7.7e-11 | 157 | 215 | 1 | 57 |
GAGA_bind 1 mdddgsrernkgyyepa..aslkenlglqlmssiaerdaki....rernlalsekkaavaerd 57 mdddg+ rn+gyyepa +s+k nlglqlm +i +r++k+ r+ nl ++++ ++++++ GSBRNA2T00136578001 157 MDDDGF--RNWGYYEPAaaTSFKGNLGLQLMPTI-DRNTKPflpgRDPNL-MIGQTGSYHHHS 215 99**99..9******99899**************.9**************.9*******9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MDLPRDVETT NHSLEIPITM DALQKKLFAA QGSQLRLYEQ YMSSVSRLKK KDQVIDLVRS 60 EASINAQALK KLDEEDQILR GEYDDLVNQC NDLKRECFIY QLDLEASKRS GNKSEQRARE 120 ADSRARVLEQ ELKHVYSIIK KHESLVDSVL ATIIFAMDDD GFRNWGYYEP AAATSFKGNL 180 GLQLMPTIDR NTKPFLPGRD PNLMIGQTGS YHHHSTTLSL T* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00136578001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013707968.1 | 1e-107 | WEB family protein At5g16730, chloroplastic-like | ||||
TrEMBL | A0A3P6GGD3 | 1e-155 | A0A3P6GGD3_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g106650.1 | 1e-102 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 1e-33 | basic pentacysteine 2 |
Publications ? help Back to Top | |||
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