PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00136578001
Common NameGSBRNA2T00136578001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 222aa    MW: 25207.5 Da    PI: 6.253
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00136578001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind34.27.7e-11157215157
            GAGA_bind   1 mdddgsrernkgyyepa..aslkenlglqlmssiaerdaki....rernlalsekkaavaerd 57 
                          mdddg+  rn+gyyepa  +s+k nlglqlm +i +r++k+    r+ nl ++++ ++++++ 
  GSBRNA2T00136578001 157 MDDDGF--RNWGYYEPAaaTSFKGNLGLQLMPTI-DRNTKPflpgRDPNL-MIGQTGSYHHHS 215
                          99**99..9******99899**************.9**************.9*******9986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDLPRDVETT NHSLEIPITM DALQKKLFAA QGSQLRLYEQ YMSSVSRLKK KDQVIDLVRS  60
EASINAQALK KLDEEDQILR GEYDDLVNQC NDLKRECFIY QLDLEASKRS GNKSEQRARE  120
ADSRARVLEQ ELKHVYSIIK KHESLVDSVL ATIIFAMDDD GFRNWGYYEP AAATSFKGNL  180
GLQLMPTIDR NTKPFLPGRD PNLMIGQTGS YHHHSTTLSL T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00136578001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013707968.11e-107WEB family protein At5g16730, chloroplastic-like
TrEMBLA0A3P6GGD31e-155A0A3P6GGD3_BRAOL; Uncharacterized protein
STRINGBo8g106650.11e-102(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-33basic pentacysteine 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]