PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00136435001 | ||||||||
Common Name | GSBRNA2T00136435001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 197aa MW: 21196.3 Da PI: 4.0692 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.8 | 3.9e-05 | 169 | 192 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C+ C+++F++ + L++H + H GSBRNA2T00136435001 169 FGCSSCNRTFTSEMGLQSHTKAkH 192 56*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.928 | 169 | 196 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 171 | 192 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MLLGLAVFDI LDSLSDDDEP AVAKSGVKQV NFQLPNDDAK AEEDSEEDDS DDDEDDDDSE 60 DEEEEKKVTA EVEEDDDDED SSDDEEDDSA DEETPEKKVE EAKKRPAEAT TSKTASNKKA 120 KFVTPQKSES KKPHVHVATP HPSKGGKSSG SNGESSKQQQ QTPKSANAFG CSSCNRTFTS 180 EMGLQSHTKA KHSAAA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.8328 | 3e-64 | flower| microspore| microspore-derived embryo| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, roots, stems, young plantlets, flowers and siliques. Highest levels in ovules, embryos, shoot apical meristems and first leaves. Also expressed in somatic embryos. {ECO:0000269|PubMed:15144374, ECO:0000269|PubMed:16553900}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Involved in the modulation of abscisic acid and stress-responsive genes. {ECO:0000269|PubMed:12694598, ECO:0000269|PubMed:16553900}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00136435001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid. {ECO:0000269|PubMed:16553900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009122675.1 | 1e-122 | PREDICTED: histone deacetylase HDT3 | ||||
Refseq | XP_013668369.1 | 1e-122 | histone deacetylase HDT3-like | ||||
Swissprot | Q9LZR5 | 2e-48 | HDT3_ARATH; Histone deacetylase HDT3 | ||||
TrEMBL | A0A3P6DD78 | 1e-132 | A0A3P6DD78_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CZ66 | 1e-132 | M4CZ66_BRARP; Uncharacterized protein | ||||
STRING | Bra009513.1-P | 1e-133 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2027 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 6e-27 | histone deacetylase 2C |