PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00136429001
Common NameGSBRNA2T00136429001, LOC106370741
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 220aa    MW: 25425.6 Da    PI: 8.0428
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00136429001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.46e-1978132256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +k++++t+eql  Le+ F+++ +++ +++ +L+k+l+L+ rqV vWFqNrRa+++
  GSBRNA2T00136429001  78 KKKQKLTTEQLASLEQSFQEDIKLDSDRKVKLSKELRLQPRQVAVWFQNRRARWR 132
                          78999*************************************************9 PP
2HD-ZIP_I/II1123.9e-3678166189
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                          +kk++l++eq+++LE+sF+e+ kL+++rKv+l++eL+lqprqvavWFqnrRAR++ k+lE+ y++L+++yd ++++n++L++ev +Lr 
  GSBRNA2T00136429001  78 KKKQKLTTEQLASLEQSFQEDIKLDSDRKVKLSKELRLQPRQVAVWFQNRRARWRVKHLEESYNSLRKEYDVVSRQNQMLHDEVMNLRG 166
                          59************************************************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-1860134IPR009057Homeodomain-like
SuperFamilySSF466893.68E-1866133IPR009057Homeodomain-like
PROSITE profilePS5007117.0774134IPR001356Homeobox domain
SMARTSM003891.8E-1776138IPR001356Homeobox domain
CDDcd000867.82E-1678135No hitNo description
PfamPF000464.2E-1678132IPR001356Homeobox domain
PROSITE patternPS000270109132IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MEWSTTSNVE NMRVAFMPLQ WLESNSSNSL QNFSYDPYAG NSSTPVLTQT GPVISVPESS  60
EKITNACQYP SNDDEMIKKK QKLTTEQLAS LEQSFQEDIK LDSDRKVKLS KELRLQPRQV  120
AVWFQNRRAR WRVKHLEESY NSLRKEYDVV SRQNQMLHDE VMNLRGVILK DHLMKRQMNL  180
NNNQIAGGSQ IYGTDQYNNP MCVASTCWPP LSSQQPYPW*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00136429001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013666190.11e-163putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR05e-97ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A0D3EI291e-159A0A0D3EI29_BRAOL; Uncharacterized protein
STRINGBo9g181710.11e-159(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-99homeobox 51
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  3. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]