PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00136357001

Common Name

GSBRNA2T00136357001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 325aa MW: 35350.6 Da PI: 8.2917

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00136357001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00037	136	158	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H GSBRNA2T00136357001 136 YQCKTCDRTFPSFQALGGHRASH 158 9***********99999998887 PP
2	zf-C2H2	12.6	0.00041	191	213	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F++ L H+r+H GSBRNA2T00136357001 191 HECGVCGAEFTSGQALGGHMRRH 213 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.8E-12	135	160	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.62E-8	135	158	No hit	No description
SMART	SM00355	0.028	136	158	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.471	136	163	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	138	158	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.62E-8	186	213	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.6E-4	189	215	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.4E-11	190	215	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.054	191	213	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.951	191	215	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	193	213	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MEAFVEAIAA SKEQSLIFKG KRTKRQRPQS PIPFSIAPPI VSSHARDILE ESKKDGVITS 60 SSSSASWFSN NNATLKAEED EEEQDIANCL ILLSQGHSLP IPNHEANNNN TFRFSSRRFL 120 ETSSSNGGGK AGYYVYQCKT CDRTFPSFQA LGGHRASHKK PKATLSLYSN IDNNNNRSLA 180 VYGKAGSNKV HECGVCGAEF TSGQALGGHM RRHRGAVVIA AAPVTTVTVA TAAANTELSL 240 SSMSFDQISD GQDHLVMPAT KRAKKTVVSL DLDLNLPASE DENRVNGFTF ALKQKQEQEH 300 QPTMQREEPK CLLMSAPTLV DCRY*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00487	DAP	Transfer from AT5G04390	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00136357001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009122602.1	0.0	PREDICTED: zinc finger protein ZAT5
Refseq	XP_013732898.2	0.0	zinc finger protein ZAT5-like
TrEMBL	A0A397XQQ5	0.0	A0A397XQQ5_BRACM; Uncharacterized protein
TrEMBL	M4CZ10	0.0	M4CZ10_BRARP; Uncharacterized protein
STRING	Bra009457.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2231	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-148	C2H2 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]