PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00136321001

Common Name

GSBRNA2T00136321001, LOC106419034

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 308aa MW: 33551.2 Da PI: 7.0084

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00136321001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	20.8	8.1e-07	181	226	18	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +rsR RK+++i+eLe++v L+a +L ++ +l ++ a+l e+ GSBRNA2T00136321001 181 QRSRVRKLQYIAELERRVSMLQAVEADLSVRVASLLQTRATLSLEN 226 79******************************99999999988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14703	6.01E-15	175	220	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.8E-6	181	233	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MSRPGQLPPR CPIPKKLSLN PYADTFYSSS SPVESYISHH HKSSSPAQDS TLEEQPAWLD 60 ELLGDKTDCG GPSPLRRSAS DSVVLLGDIS ADFAGFNQSE DEESLSSEAC GELESACVYG 120 PNSPRAKNSS SFSDSTIASA FSEYGSQKAP QNADDTVKGS ICHPHEAENA CGSNAKRNPG 180 QRSRVRKLQY IAELERRVSM LQAVEADLSV RVASLLQTRA TLSLENSQMK QQMAILKQDK 240 LIREGEYLLL KKEAQRLNSR LRNFGSNNNN NNNRLARSYS AGSSIGPRTG SSPLDWNLLD 300 LTKLNLN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00136321001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013715234.1	0.0	basic leucine zipper 34
Refseq	XP_013715235.1	0.0	basic leucine zipper 34
TrEMBL	A0A397XNW5	0.0	A0A397XNW5_BRACM; Uncharacterized protein
STRING	Bra009426.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13642	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	4e-17	bZIP family protein

Link Out ? help Back to Top
Entrez Gene	106419034

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]